Paenibacillus sp. FSL R5-0912: R50912_19615
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Entry
R50912_19615 CDS
T03334
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50912_19615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeq03019
]
R50912_19615
Messenger RNA biogenesis [BR:
paeq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R50912_19615
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_PNO1_2nd
HDOD
KH_NusA_2nd
DUF4083
Innexin
DUF4330
Motif
Other DBs
NCBI-ProteinID:
AIQ42002
LinkDB
All DBs
Position
complement(4477841..4479382)
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AA seq
513 aa
AA seq
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METVIWVIIVLVVAAAFFGFGYFIRKSLAEAKISSAEKEAVVIVENAKKEAEALKKETVL
EAKDEVHRIRTEAEKETRERRNEIQRQERRLLQKEESLDKKMESLERKEEQVANKEKRID
ETQQQIDVIYKNQVTELERISNLSIDDARSIILSNVEQEVRHETAQMIKEIEQQAKEEAD
KKAREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREVARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDIVLAKRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALS
AARPGARRETLETYIKRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFRL
ARDITKMIESELDYPGHIKVTVIRETRAVEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagtgatctgggtcattatcgttctcgttgtagctgcagcattctttggattc
ggttattttattcgtaaatcccttgcagaagctaagatttcaagcgcagagaaagaagcc
gtagtcatcgtggagaacgcgaagaaagaggcggaggcgctgaagaaggaaacggtactc
gaggctaaggacgaagttcatagaatccgtaccgaagctgagaaagaaactcgtgaacgt
cggaatgaaatccaacggcaagagagacgtttgctgcaaaaggaagaatcgctggataaa
aaaatggaatcgcttgaacgaaaagaagaacaagtagctaacaaagagaaacgaattgat
gaaacccaacagcagattgatgttatttacaagaatcaggttactgagctggaacgtatc
tccaatctgagcatcgatgatgccagaagtatcattctcagcaatgttgaacaggaagtt
cgccatgaaactgctcagatgattaaggaaatagaacagcaggccaaggaagaagcggac
aagaaagcccgcgagattattacactggctattcaacgctgtgcagctgatcatgtggca
gaaaccacggtttctgttgttacattgccgaatgaagagatgaaaggccggattattggc
cgcgaaggccgtaacatccgcgccctggaaactcttacggggattgatcttattattgat
gatacgccggaagcggttatactgtcaggatttgatccgatccgccgtgaggtggcccgt
acagcacttgagaaactggtagctgatggacgtatccatccggcacggattgaagaaatg
gtggagaaatcccgtaaagaagtggatgagcggattcgtgaatacggtgaacaagctacc
ttcgaggttggcgttcacggcttgcatccggatctgatcaaaattctgggccgtctgaaa
ttccgtacgagctacggtcaaaacgtacttaagcactccatggaggttgcttatttgact
ggacttatggccggtgagcttggggaagacatcgtgcttgcaaaacgtgccggactgctg
catgatatcggcaaagcgcttgatcatgaagtagaaggctcgcatgttgaaatcggcgtc
gaactggcgaagaagtacaaagaacatccggtggttatcaacagtatcgcgtcccatcac
ggagattgcgaagctacctcggtgattgctatgctggtcggagctgctgatgcattgtca
gctgcacgtcccggcgcacgccgcgaaaccctggaaacgtacatcaaacgtctggagaag
ctggaggagatctcggagtccttcgaaggcgttgagaaatcctacgctatccaagcaggc
cgcgaggtccgcgtaatggtacagccagagaagattgatgatgcggaagcattccgtctg
gctcgtgacattacgaagatgatcgagagtgagctggattatccgggtcatatcaaggtt
accgttattcgtgagacacgtgctgtagaatatgctaaataa
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