Paenibacillus sp. FSL R5-0912: R50912_19885
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Entry
R50912_19885 CDS
T03334
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq02020
Two-component system
paeq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
R50912_19885
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R50912_19885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paeq03021
]
R50912_19885
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
paeq02035
]
R50912_19885
Transcription machinery [BR:
paeq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R50912_19885
Bacterial motility proteins [BR:
paeq02035
]
Flagellar system
Flagellar assembly proteins
Stator
R50912_19885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
HTH_16
PhyR_sigma-like
Sigma70_ECF
HTH_23
CtpB_N-like
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AIQ42053
LinkDB
All DBs
Position
complement(4535627..4536415)
Genome browser
AA seq
262 aa
AA seq
DB search
MNEHKAAQSETDGLWEQWKEQGDPEAKKKLIESYLHIVDYVSSRLAVGLPKNVSKDDLAS
NGVMGLIDAIEKFDYKRGLQFQTYASWRVRGAILDSLRQSDWVPRSVREKAKKIEDAYQQ
LEQKYLRSVSDDEMSQYLNITETEFQTMLQDVAVMSLCSLEDPIREEESETRMSILVDDK
AKNPDRKVNEFYLRDTLTKGIEKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLEKNRDLLMQND
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcataaagctgctcagtcagaaacagatggactatgggaacaatggaaagag
caaggtgatcctgaggccaaaaaaaagctgattgagagttatctccatattgtagattac
gtatcaagccgtctggcagtgggattacccaaaaatgtatccaaagatgacttggccagc
aatggtgtgatgggactgattgatgccatcgagaaattcgactacaagcggggactgcaa
tttcagacctatgcttcctggcgggtgagaggagcgatccttgactctctgcggcaaagt
gactgggttcccagatccgtgcgcgaaaaagcgaaaaaaatcgaggatgcctaccagcag
ctggaacagaagtatttgagatccgttagtgacgatgaaatgagccagtatctgaacatt
actgaaacggagtttcagactatgctgcaggatgttgcagtcatgtcgctctgctcatta
gaagatcctattcgtgaagaagaatcagagacacggatgtctattctggtggatgataag
gctaagaatccggaccggaaagtgaatgagttctatctacgtgatacgctgactaaaggc
atcgagaaattaacagtgaaagaacggaccgtcgtgtcccttttatattatgaggattta
tctttgagcgagatcgctgaagtgatgtcactctctccttcacggatctcacagcttcat
tcgaaggctattttgcggctaagaggaacacttgagaagaaccgtgatcttcttatgcaa
aatgattaa
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