Paenibacillus sp. FSL R5-0912: R50912_20065
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Entry
R50912_20065 CDS
T03334
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paeq03032
]
R50912_20065
03400 DNA repair and recombination proteins [BR:
paeq03400
]
R50912_20065
Enzymes [BR:
paeq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R50912_20065
DNA replication proteins [BR:
paeq03032
]
Prokaryotic type
DNA Topoisomerases
R50912_20065
DNA repair and recombination proteins [BR:
paeq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R50912_20065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Lar_restr_allev
Zn_ribbon_RPB9
Toprim_3
DUF7340
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AIQ42088
UniProt:
A0A089K5A6
LinkDB
All DBs
Position
complement(4568088..4570184)
Genome browser
AA seq
698 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALDLDNTQECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDSLFEAKFHKLNGDKKELGQESDVQEVLDAIQNSAFQVKE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRASKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSPTAQEEAKELILSKYGEKFVPETPRQYSKKAAGAQDAHEAIRPTSALREPDMV
KGFLSRDQFRLYKLVWERFVSSQMSSALLDTLSVDITAGTAIFRAVGSKVSFPGFMKVYV
EGNDDGTTDEEKYLPPLKAGDDLTKHDIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELIIEQMEEFFPEILDVEFTAHMEGDLDHVEEG
AEDWVKVLAQFYESFEKRLLYAEEEMKEIEIEDEVSDELCEKCGKPMVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVSCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSVKP
CPVCGSWMVEKRNKQGTKLQCTSCDHTEEVLDNEELAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcgttggttattgtagagtcaccggcaaaagcaaaaacgattggtaaatat
ctgggcagtaaatatattgtaaaggcatcaatgggacatatcagagatttgccgaaaagt
cagattggtgtggaagtggagaatgatttcaaccccaaatatataacaatccgcggcaag
ggctctatcttgaaggaactcaaggatgccagcaaaaaagtgaaaaaagtctatctcgca
gctgacccggaccgcgaaggtgaagctattgcctggcatttggcgcatgcgctggatttg
gacaacacacaggaatgccgggttgtctttaatgagattacgaagcaggctgtgaaggat
gcattcaagactccgcgcaaaattaacatggatcttgtgaatgcccaacaggcccgccgt
attctggaccggctcgtcggatacaagattagccccctattatggaagaaagtcaaaaaa
ggcctgtccgcaggacgggtacaatcggtagcagtgaagattataatggaccgcgagaac
gaaatttctgcttttgttcccacggaatactggagtattactgcgaagctgggcatccgc
gattccctgttcgaagccaagttccacaagctgaatggcgataaaaaagagctgggccag
gagagcgatgtacaggaagtattggatgctattcaaaattccgccttccaggttaaagag
gtaaaagagaaggaaagacaacggcatccttccgctccgtttacgacaagctcactgcag
caggaagctgcccgtaagctgggcttccgcgcatccaagaccatgtctgttgctcagcag
ctctatgagggggttgagctgggcaaggaaggcactgtcggtttaattacctatatgcgt
acggattccacccgtctgtctcctacggcccaggaagaagctaaggagctgatcctctcc
aaatacggtgagaagttcgttcccgagacaccgcgccagtattccaagaaagctgcggga
gcccaggatgcgcatgaagcgatccgtcctacctcggcgctccgagagcctgacatggtc
aaaggattcctgagccgtgaccaattccgcctgtataagctggtttgggagcgttttgtt
tccagtcagatgtcttccgccctgcttgatacactgtctgtggatattacagcaggcact
gcgattttcagagccgtcgggtccaaggtttctttcccgggcttcatgaaggtgtacgtg
gaaggcaatgatgacggcacaacggatgaggagaagtatcttccgccgcttaaggccggc
gatgatttaaccaaacatgatattgagccgaagcagcatttcactcagccgcctccaaga
tatacggaagcgcgtctggtcaaaacgctggaggaactggggatcggccgtccgagtacg
tatgcgccaacactggagacgatccagaagcgtggatatgtagcgattgaagagaagaag
tttatgccaaccgaactcggtgagctaatcatagagcaaatggaagagttcttcccggaa
attctggatgtggaattcacagcccatatggaaggggatcttgaccatgtggaggaaggt
gctgaggactgggtgaaagtgctggcccagttctacgaatcttttgagaaacgtctcctc
tacgccgaagaagaaatgaaggaaattgagattgaagatgaagtttccgacgagctatgc
gagaaatgcgggaagccgatggtctacaagctgggccgtttcggtaaattcctggcctgc
tccggattcccggactgccgtaatacgaagccgatcatcaaggatatcggagtcagctgt
ccgaaatgtcatgagggtaaggttgtggagcgccgcagcaagaaaggccgtgtcttctac
ggctgcgatcagtatccgggctgtgactttgtatcctgggatagaccatcggttaaacca
tgtcctgtctgcggctcctggatggtagagaagcgcaacaaacagggaacaaagctgcaa
tgcacttcttgtgatcatactgaggaagtgctggacaacgaagaactggcagaataa
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