Paenibacillus sp. FSL R5-0912: R50912_30855
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Entry
R50912_30855 CDS
T03334
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R50912_30855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paeq03021
]
R50912_30855
03400 DNA repair and recombination proteins [BR:
paeq03400
]
R50912_30855
Enzymes [BR:
paeq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50912_30855
Transcription machinery [BR:
paeq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50912_30855
DNA repair and recombination proteins [BR:
paeq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50912_30855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIQ43900
LinkDB
All DBs
Position
complement(6990562..6994173)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTNFTEAQQNALLITTVGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG
ADVRELIMAAPEASAVGKEYLGLIIARCFETYHTTKTSVILDKIKQLGFTYSTRSGVTVA
VSDVIVPEEKATILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDELTNVLLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETKEILVHRNDLIDSDKAEAIVNAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IDAGDTTLLPGAFADIHEYEAANKEAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRNVKLSDPNEESKQAALETV
PAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgaatttatgaaaatcgggctcgcttccccggaaaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaaccatcaactatcgtactttgaaa
ccggaaaaagagggtcttttttgcgaacgcatctttggaccgcaaaaggactgggaatgt
cactgtggtaaatacaaacgcgtccgttataagggcgttgtgtgcgaccgctgcggcgtg
gaagttacccgcgctaaagtccgccgcgaacgtatgggccacatcgagctggcagctccg
gtatctcatatctggtacttcaaaggtattccgagccgtatgggtctggcactggatatg
tctccaagatcgctcgaagagattatctactttgcatcttatgttgtaaccgatccgggt
gaaactcctttggagaagaaacaactgctatctgagaaagaataccgcagctaccgtgag
aaatacggctacggcttccaggctggcatgggtgctgaagccgtcaaaaaactgcttcag
gatatcgatatcgataaagaactggaattcctcaaagaagagctgcgcacggcccaaggc
cagcgccgtaaccgggcgatcaaacgtctcgaagttattgaggctttccgcaactccggc
aacaagccagactggatgatcatggatgtacttccggttattcctccggagcttcgccct
atggttcagctcgatggcggccgttttgctacgtctgaccttaatgacctgtaccgccgc
gtaattaaccgtaacaaccgtctgaagagactgctggatctcggtgctcctgatattatc
gtgcagaatgagaaacggatgcttcaggaagctgttgatgccctgatcgacaatggccgc
cgcggccgtcctgtaacaggtcctggtaaccgtccgctcaaatcgctcagccatatgctg
aaaggtaaacaaggacgtttccgccagaacttgctcggtaagcgcgttgactattccgga
cgttccgttatcgtcgtaggaccttacctcaagatgtaccaatgcggtcttccaaagaag
atggcactggaactcttcaaaccgtttgtaatgaaagaattggttaataagggccttgcc
cacaacatcaagagcgcaaaacgtaaggttgagcgcgtaagtcctgaagtctgggatgtg
cttgaagaagtaatcagagaacatccggttctgctgaaccgtgcccctacactgcataga
ctgggtatacaggcgtttgaaccgattctggtagaaggtcacgcgatccgtcttcacccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccagatggcggtacacgttcct
ctgtccgctgaagctcaagctgaagcccgtattctcatgctggcatccggtaacatcctg
aaccctaaagatggtaagccggttgttacaccttcccaggatatggtccttggtacgttc
tatctgaccatggataacaaggaagaaaagggaacgggtatgattctgcgtaccgtgaac
gaagctgtttcagcttaccaacgcggaaccgctggtctgcatgcgcgtgttgctattcct
gttaaggcactgggtaaaaccaactttacagaagcgcagcaaaatgcattgctgattaca
acggtgggtaagattatcttcaacgaaatctatccaagcagtttcccatatatcaatgaa
gctaccaaaacaaacctgctgcagggtacaccagagaagtacttcatctatgaaaaaggc
gcggatgtccgcgaattgatcatggctgctccggaagccagtgctgtaggtaaagaatat
ctgggcctaatcattgcccgctgcttcgaaacctatcacactaccaagacttcagtaatt
ctggataaaattaagcagctcggctttacgtactctacacgttctggtgttacggttgcc
gtatcagacgttattgtgcctgaggaaaaagctacaattcttaaagaatccgaagctaag
gttgatgtagtagcgaatcaataccgccgcggtctgattaccaatgatgaacggtatgac
cgtgttatcgagatctggtcgaagactaaggatgaacttacgaacgtcctgctgaaatcg
atggatcgtttcaactccatcatgctcatggtcgactccaaagcgcgtggtaacaaatcg
cagatcacccagctcggtggtatgcgtggtctgatggctaccccttcgggccggattttc
gaattgccaatcaaagcgaacttccgtgaaggtctgaccgtcctcgagtactttatttcc
actcacggagcgcgtaaaggtctggccgatacagcgctgcgtacagcggattccgggtac
ttgacacgccgtctcgttgacgtggctcaggacgtaatcgtccgcgaagaagattgcggt
accgataaaggcttcaccgtcagccggattcaagatggcaaggaagttatcgaggatctc
tacgaccgtattgaaggccgttattccttcgaaactgtgcgtcatccggaaacgaaggaa
atcctcgttcaccgtaacgatctgattgactccgataaggctgaagcaatcgtgaatgct
ggcgttactaaattgcagatccgctctgtactgagttgccgtgcccgtcacggtgtctgc
aagaagtgctacggtcgtaacctggcaacaggtaaattcgtggaaatcggggaagctgtc
ggcattattgctgcacaatccattggtgaaccaggaacacagcttaccatgcgtacattc
cataccggtggtgttgccggagacgatatcacgcaaggtttgccgcgtatccaagagttg
tttgaagcccgtaaccctaaaggtcaggcgacaatcagtgaaattgacggcgtagttaag
gaaattcgtgaaaccaaggaccgtcgtgaaatcgaagtccagggtgaagcggagtccaag
acctattccatcacttacggttcccgtctgcgtgtcagtgagggccaggagattgaagct
ggtgatgaattgacagacggttctatcgaccctaaagaaatgctgcgcatcaaagggatc
cgcggggtacagaactacattctgcaagaagtacagcgtgtataccgtaaccagggcgtt
gagatcaatgataagcatattgaagttatgatcaagcagatgctgcgtaaaattcgtatt
atcgatgctggagataccactctcctgccgggtgcttttgcggatattcatgaatatgaa
gcagccaacaaggaagctatcctgtctggtaaagaacctgcagttgccaaaccggtactg
ctcggtattaccaaagcctctctggaaacagactccttcctgtctgcggcctctttccag
gaaactacccgcgtcttgacggatgcagcaattaagggtaaagtggataagttgctcggt
cttaaagaaaatgttatcatcggtaagctgattcctgcaggtacaggtatgaatcgttac
cgtaatgtgaaacttagtgatccgaatgaagaaagcaagcaagccgctttagaaacggtt
ccagctgagtaa
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integrated database retrieval system
