Pseudomonas aeruginosa PA1R: PA1R_gp0809
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Entry
PA1R_gp0809 CDS
T02929
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paer
Pseudomonas aeruginosa PA1R
Pathway
paer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA1R_gp0809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paer03019
]
PA1R_gp0809
03009 Ribosome biogenesis [BR:
paer03009
]
PA1R_gp0809
Enzymes [BR:
paer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PA1R_gp0809
Messenger RNA biogenesis [BR:
paer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PA1R_gp0809
Ribosome biogenesis [BR:
paer03009
]
Prokaryotic type
rRNA processing factors
PA1R_gp0809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHA22576
LinkDB
All DBs
Position
922000..925164
Genome browser
AA seq
1054 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIR
QVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVE
PAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRD
GRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREE
RAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPR
EDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELE
GSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDASTSE
AVETQDADSEANTGETADIEAPVTVSVVRDEAGQSTLLVAQATEEAPFASESVESREDAE
SAVQPATEAAEEVAAPVPVEAAAPSEPATTEEPTPAIAAVPANATGRALNDPREKRRLQR
EAERLAREAAAAAEAAAQAAPAVEEVPAVASEEASAQEEPAAPQAEEIAQADVPSQADEA
QEAVQAEPEASGEDATDTEHAKKTEESETSRPHA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgacggccaacgc
ctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaacatctacaaa
ggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttcggcgccgaa
cgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaatcccccgaa
ggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgtatcgaaggc
gaagagcgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggccgacatgggc
ctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgggacctcgac
tacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggcgcgcccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaacttcatccgc
caggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgttccgctgttc
aatcgcttccagatcgagagccagatcgagaccgctttccagcgcgaagtgaagctgccg
tccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtccgcgaagcc
ctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgc
tgcaacggccagggcatcatccgcgacgtcgagtcgctgtcgctggccatcctgcgcctg
attgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtgcccttccag
gtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaactgcgtacc
cgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttcgaagtccag
cgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaaatggccacc
gtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgccaggaagca
gcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagcaccggtcgag
ccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtccctggtcggc
ctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaagccggctgcc
gagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgccgccgcgat
ggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgcgcagagcgc
caaccgcgcgaagagcgcgccgaacgcccgaaccgcgaagagcgcagcgaacgtcgccgc
gaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggccgtgaagag
cgcgccgagcggacaccccgcgaagagcgccagccgcgcgaaggccgcgaaggtcgcgag
gaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggcccgcgaagagcgccaa
ccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgccagccgcgc
gaggatcgccaggctcgcgacgccgcggccctggaagccgaggcgctgccgaacgacgag
agcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgccgctcccgc
ggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggtgagctggaa
ggcagcgaggcgaccgataatgccgccgcgccgctgaacaccgtcgcagccgccgccgct
gccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagccccggccact
accagcgaggctgccagcgaaaccacggcaagcgatgagaccgacgcgtcgaccagcgaa
gccgtcgaaacccaggacgcggacagcgaggccaataccggcgaaaccgccgacatcgaa
gcgccggtgaccgtcagcgtggtccgggacgaagccggccagagcaccctgctggtcgcg
caagccactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaagacgccgag
agcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggtgcccgtcgaa
gcagcagcccctagcgagcccgcaaccaccgaggagccgaccccggccatcgcggcggtg
ccggccaacgcgaccggccgtgccctcaacgacccacgggaaaaacgtcgcctgcaacgc
gaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagctcaggccgct
cccgccgtcgaggaggtcccggctgtagcgagcgaggaagcgtcggcccaggaggaacct
gctgcaccccaggctgaagaaatcgcccaggccgacgttccgtcccaggcggacgaagcc
caggaagcggtacaggccgagcctgaagcttccggcgaagacgccaccgacacggagcac
gcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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