Pseudomonas aeruginosa PA1R: PA1R_gp1307
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Entry
PA1R_gp1307 CDS
T02929
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
paer
Pseudomonas aeruginosa PA1R
Brite
KEGG Orthology (KO) [BR:
paer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paer03009
]
PA1R_gp1307
Enzymes [BR:
paer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PA1R_gp1307
Ribosome biogenesis [BR:
paer03009
]
Prokaryotic type
rRNA helicases
PA1R_gp1307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AHA23060
LinkDB
All DBs
Position
complement(1469155..1470480)
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AA seq
441 aa
AA seq
DB search
MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH
RLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRK
NPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTL
LFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWLLSN
ETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVER
YLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGAAAKPAAKRKPAARPKAG
PSAVVSADGMAPLKRKKPTAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
ttgttcagccaatttcccctccacgaacgcctgctgaaggcactggaaagcctgtccttc
agcgagccgacgccggtccaggccgcggccattcccaaggcgctggaggggcacgacctg
cgggtcacggcgcagaccggcagcggcaagaccgcggccttcctgctgccgctgctgcac
cgcctgctggccgaggacaagccgcgctccctggcgcgcgcgctgatcctcctgccgacc
cgcgagctggcccagcagaccctcaaggaagtcgagcgcttcgcccagttcaccttcatc
aaggcctgcctgatcactggtggcgaggacttcaaggtgcagggcgcgcgcctgcgcaag
aacccggagatcatcatcggcacccccggccgcctgctcgagcagcgcaacgccggcaac
ctgccgttgcaggacatcgaggtgctggtgctggacgaggccgaccgcatgctcgacatg
ggcttcgccgacgacgtgctggccctggccaatgcctgcccggccgagcgccagaccctg
ctgttctccgccacccacagcggcgccgggttgaacaaggtgatcgccgaggtgctgcgc
gagccgcaagtgctgcgcctgaaccaggtcggcgagctgaacgagaatgtccgccagcag
gtcatcaccgccgacgacgtggcgcacaaggaacagttgctgcaatggctgctgagcaac
gagacctacaccaaggccatcgtcttcaccaatacccgggtctccgccgatcgcctgacc
gggcggctgatcgccaaccagcacaaggtcttcgtcctgcatggcgagaaggaccagaag
gaccgcaagctggccatcgagcgcctgaagcagggcgcggtgaagatcctcgtcgccacc
gacgtcgccgcacgcggcctggacgtcgaaggcctggacctggtgatcaacttcgacatg
ccgcgcagcggcgacgagtacgtgcaccgcatcggccggaccggtcgcgccggcgccgag
ggcctggcgatctcgctgatctgccatggcgactggaacctgatgtcgagcgtcgaacgc
tacctcaagcagaacttcgaacgacgcaacatcaaggaactgaaggccgcctaccagggg
ccgaagaaactcaaggcgtcgggcaaggccgccggcagcaagaagaaaaagcaggacagg
aagggcgccgccgccaagcccgcggccaagcgcaagcccgccgcgcggccgaaggccggg
ccgtcggcggtggtcagcgccgacggcatggcgccgctcaagcgcaagaagccgacggcg
gagtga
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