Pseudomonas aeruginosa PA1R: PA1R_gp3939
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Entry
PA1R_gp3939 CDS
T02929
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paer
Pseudomonas aeruginosa PA1R
Pathway
paer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA1R_gp3939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paer03019
]
PA1R_gp3939
Enzymes [BR:
paer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PA1R_gp3939
Messenger RNA biogenesis [BR:
paer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PA1R_gp3939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHA25657
LinkDB
All DBs
Position
complement(4394387..4396300)
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AA seq
637 aa
AA seq
DB search
MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN
PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKAIEKMTRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQ
ASNPDSNVAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVDG
NRDPEEFLDDDFDNFGNRADYVSPYQGQENKGRGRRGGQQKPQGGTGQQGRGQGQARGKS
QGAAQGGARGQGAGQGKAKKPRAGKPRGQGRENASRMSDAPLREPSEYGTGKQPSRQPVV
INKRDLVRMDRFPTAEQLDELEPRRKGERPALLTRNR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcttccctcggactctccgaggcgcttgcccgcgctgtggaggctgcgggc
tacagccagcccactcccgtgcaacagcgggcgattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggcaccggcaagaccggtggtttcgccctgccggtactg
gagcgcctgttccccgccggtcatcccgaccgcgaacaccgccacggcccgcgccaggcg
cgcgtgctggtactgaccccgacccgtgagctggccgcccaggtgcatgacagcttcaag
gtctacgcccgcgacctgccgctgaacagcacctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccctggccaagggcgtcgacgtactcgtcgcctgccccggccgcctg
ctcgacctggccgggcagaacaaggtcgacctgtcccacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggttctcgccaag
ctgccgcccaagcgccagaacctgctgttctcggctaccttctcgaaagacatcgtcgac
ctcgccaacaagctcctgcacaacccggaacgcatcgaggtaacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtgttccgcctgccggcgccgcagaagcgcgccctgctg
gcgcacctggtgaccgtcggcgcctgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgtctcgccgagtacctgaccaagcacggcctgccggccgccgcgatccat
ggcaacaagagccagaacgcgcggaccaaggcgctggccgacttcaaggccaacgacgtg
cgcatcctggtggcgaccgacatcgccgcccgcggcctggatatcgaccagttgccccat
gtggtcaactacgagctgcccaacgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgagccggacgcagcggcgaggcgatctcgctggtggcgccggacgaagagaagctg
ctcaaggccatcgagaagatgaccagacagcgtattcccgatggcgatgcccagggtttc
gaccccgaggccgtgctgcccgaggtggcccagccggagccccgcgaagcgccgcagaag
cagccgcgccgcgacaaggaacggcgcagcagccgcgagcgcaagccgaaagacgcccag
gcgagcaaccccgacagcaatgtcgctgcggcccaggacggtaccgagaagccggctgga
aagcgccgccgtcgcggtggcaagaacaaggaaaaccgcgaggccggccaagcgcagcag
ccgcggcagagccgcgaagcgcgtccggccaagcccaatcggccgccggaagtcgacggt
aatcgcgatccggaagagttcctcgacgacgacttcgacaatttcggcaaccgcgccgac
tacgtcagcccctaccagggccaggaaaacaagggacgcggacgccgcggtggccagcag
aaaccccagggcggcaccggccagcagggtcgtggccagggccaagctcgcggcaagagc
cagggcgccgctcaaggcggcgctcgcggtcagggtgccggccagggcaaggcgaagaaa
ccgcgcgccggcaagccgcgcggccagggtcgcgagaatgcctcgcggatgagcgacgcg
ccgctgcgcgagccgtccgagtatggcaccggcaagcagccgagccgccagccggtggtg
atcaacaagcgcgacctggtgcgcatggatcgcttccccaccgccgagcagctcgacgag
ctggaaccgcggcgcaagggcgagcgccccgcactgctgacccgcaaccgctaa
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