Pseudomonas aeruginosa PA1R: PA1R_gp4901
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Entry
PA1R_gp4901 CDS
T02929
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paer
Pseudomonas aeruginosa PA1R
Brite
KEGG Orthology (KO) [BR:
paer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paer03016
]
PA1R_gp4901
Enzymes [BR:
paer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PA1R_gp4901
Transfer RNA biogenesis [BR:
paer03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PA1R_gp4901
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Ribosomal_L27_C
Motif
Other DBs
NCBI-ProteinID:
AHA26606
LinkDB
All DBs
Position
5464285..5465409
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AA seq
374 aa
AA seq
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MTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQAGDGRQEWLIDP
LLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMAHSMG
YSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAW
LLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARLRNRPRNHV
LRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQDGDFLIELIAQAARLPQSEWPEALPEP
LPPEVTPLLKSLRAIGQREAETLGMAPELMLRKKILEALLKSGYPDGPYELPDSLRGWRR
ERMGQALLDALESA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcgcccgaaatccagtggatccgcgatgatgccagcctggcgcagcaatgccgg
gaatggcgcacacagccgtacctcgcgctcgataccgagttcatgcgcgtcgataccttc
tatcccgcggccggtctggtgcaggcgggcgatggccggcaggagtggctgatcgatccg
ctgctgatccaggactggagccccttcgccgagctgctcgaagacgagcgggtggtgaag
gtgctgcatgcctgcagcgaagacctcgaggtgttcctgcgcctcaccggcagcctgccg
gtgccgctgttcgatacgcagttggccgccgcctatctcggcatggcccattcgatgggc
tactcgaagctggtgaaggaggtgctggacatcgacctgcccaaggacgagacccgttcc
gactggttgcaacggccgctcaccgagatgcagatgcgctacgccgccgacgacgtccag
cacctcgcccaggtctacctggccctggatgcgcggctgagcgaggagaaacgcgcctgg
ctgctggaggacggcgccgaactggtcgccaacctctgccgcgagagtgatccgcgcgag
gcctaccgcgaggtcaagctgggttggcggctgcgtccgcagcaactggcggtgctccgc
gaactctgcgcctggcgcgaggagcaggcacgcctgcgcaaccggccgcgcaaccacgtg
ctgcgcgaacgtaccctgtggccgctggcgcgcctgctgccgaagaacaagaccgacctg
gcggcgatcgaagacatgcatccgcgcaccgtgcgccaggacggcgacttcctcatcgaa
ctgatcgcccaggctgcgcgcctgccgcagagcgaatggcccgaggcgctgcccgagccg
ctgccgccggaggtcaccccgctgctcaagagcctgcgcgccatcggccagcgcgaagcg
gagaccctgggcatggcgcctgagctgatgctgcgcaagaagatcctcgaggcactgctc
aagagcggctatcccgacggtccctacgaactgcccgattccctccgcggctggcgccgc
gaacgcatgggccaggccctgctggacgccctggagagcgcatga
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