KEGG   Pseudomonas aeruginosa SCV20265: SCV20265_2960
Entry
SCV20265_2960     CDS       T02971                                 
Name
(GenBank) Sigma-54 dependent transcriptional regulator
  KO
K11917  sigma-54 dependent transcriptional regulator
Organism
paes  Pseudomonas aeruginosa SCV20265
Brite
KEGG Orthology (KO) [BR:paes00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:paes03000]
    SCV20265_2960
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:paes02044]
    SCV20265_2960
Transcription factors [BR:paes03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    SCV20265_2960
Secretion system [BR:paes02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   SCV20265_2960
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 AAA_5 Mg_chelatase HTH_30 AAA_16 AAA_2 AAA HTH_8 bpMoxR FixP_N AAA_19 AAA_3 Sigma70_r4
Other DBs
NCBI-ProteinID: AHC77074
LinkDB
Position
3145806..3146891
AA seq 361 aa
MSVITHPHARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVAR
HIHALSGRNGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLD
EIGDLPPSIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFY
RLHVATIQLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRE
LENAIHHALLVCRNRLIQPADLHLIDMRARQEPNGLRRAPESAAGSALEAALQALFEENR
EDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRARLEKIGELETSPRHNVVSLVG
K
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgtccgtcatcacccatccccacgcccgcgagctgaccaaatcggtgcgcgccaccgtg
ctggtgttcaacgacccccgttcccgcgagctgctggagcgcatcgagcgcctggcgccc
agcgaggccaacgcgctggtcatcggcgagaccggcaccggcaaggagctggtggcgcgc
catatccacgccctcagcggacgcaacggcggcccgttcgtcgcggtcaactgcggtgct
ttcgccgagagcctggtggagagcgagctgttcggtcacgagaagggcgcctttaccggt
gcgttgcagagcaaggccggctggttcgaggcagccaacggcggcaccctgttcctcgac
gagatcggcgacctgccgccgagcatccaggtcaagctgctgcgcgtgctgcaggaacgc
gaggtggtgcggctcggttcgcgccggccgatccccatcgacgtgcggctggtggcggcg
accaacgtcgacctggctgacgcggtggtcgccggacacttccgcgaggacctgttctac
cgcctgcacgtggcgaccatccaactgccgccgttgcgcgagcgccgcggcgatatcctg
ccgctggccgagtacttcatcgtcgagcactgccggcgcctcggctacaccagcgcgagc
ctgagcccggaagccgagcgcaagctgctcgggcattcctgggcgggcaatatccgcgag
ctggagaacgccatccaccacgcgctgctggtctgccgcaaccgtctgatccagccggcc
gacctgcacctcatcgacatgcgtgcgcgccaggagccgaacggcttgcgccgcgctccc
gaaagcgccgccggctcggcgttggaggcggcgctgcaggcgctgttcgaggaaaaccgc
gaggatctctacgagcacatcgaggaaaccgtgttccgtgccgcctatcgcttctgccac
ggcaaccagttgcagaccggacgcctgctggggatcagccgcaacatcgtgcgcgcccgc
ctggagaagatcggcgagctggaaacctcgccacggcacaacgtggtctcgctggtgggc
aagtga

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