Pasteurella aerogenes: NCTC13378_00006
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Entry
NCTC13378_00006 CDS
T05989
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03030
DNA replication
paet03430
Mismatch repair
paet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13378_00006 (dnaE)
03430 Mismatch repair
NCTC13378_00006 (dnaE)
03440 Homologous recombination
NCTC13378_00006 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paet03032
]
NCTC13378_00006 (dnaE)
03400 DNA repair and recombination proteins [BR:
paet03400
]
NCTC13378_00006 (dnaE)
Enzymes [BR:
paet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13378_00006 (dnaE)
DNA replication proteins [BR:
paet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC13378_00006 (dnaE)
DNA repair and recombination proteins [BR:
paet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC13378_00006 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
SSB
Motif
Other DBs
NCBI-ProteinID:
VEG68832
LinkDB
All DBs
Position
1:5422..8898
Genome browser
AA seq
1158 aa
AA seq
DB search
MSSPRFVHLRVHSDFSMINGITKVKPLVKACVKHDMVAMALTDFTNFCGLVRFYGEALSS
GVKPIIGADVLVKSELMGDERFELTLLAKNNQGYHNITLLLSKAYERGYQDLPYIDQEWL
IEHREGIIVLSGGRLGDVGKKLLKNNPAEVESAVSFYQQFFPQHFYLSLTRTGRSEEERY
IQAALKLAAEKRLPVVATNDVCFLQQDDFEAHEIRVAIHDSYTLDDPKRPKLYSDQQYFR
SEQEMCELFADIPSALENSVLIAQRCNVTIRLGQYFLPQFPTGELSTEDYLVMKAREGLE
ERLLVLFPDEKVRSENRQKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAET
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPSDPGMTLAKAFEAEPRL
PEIYESDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFAPLYCDSEGKHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLEKEGKAPVDIAAIPLDDEASFTLLK
AAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGHEPV
AYPDPEYQHECLQPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMA
AQREIFEKGAVAKGIDGNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKKHYPAE
FMAAVMTSEMDNTDKIVGLYDECLRMGLTVVPPDINTGKHHFSVNDHGQIVYGIGAIKGV
GEGPIEALIEARNQGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALAKN
LEDALKASDQHAKDEAIGQVDMFGVLTESPEEVENAYAKTPRWTEKQILDGERETLGLYL
SSHPISRYLKELSHYSHTRLNELVPNYRGQTSTVSGLIVNTRFAVTKKGNRIGIASLDDR
AGRLDITLFGEALERFGEKLQKDNVVIVTGQVSFDDFSQGLKMSVRDLMTLDEARSHYAK
SLAISLEQTQITPHFIKKLKEILTPYSNGALPIHAYYQSPQGRALLRFGIQWSVKPTDEL
LADLVALLGESAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcacctcgttttgttcacttgcgcgttcacagcgatttttcaatgataaatggg
attacgaaagtgaaaccgttagtgaaagcctgcgtgaaacatgacatggtggcaatggcg
ttaacggattttaccaatttttgtgggctggtgcgtttttatggcgaagcgttatcgtct
ggcgtgaaaccaattattggcgcggatgtgttggtaaaaagtgagttgatgggcgatgaa
cgatttgaattgaccttgctcgccaaaaataatcaaggttatcataatattacgctttta
ttatcaaaggcttacgaacgaggataccaagatcttccttatatcgatcaagaatggttg
attgaacatcgcgaggggatcattgttttatccggcggacgtttgggtgatgtgggcaaa
aaattgcttaaaaataatccggcggaagtagaaagtgcggtcagtttttatcaacaattt
ttcccgcaacatttttatttaagccttacccgtactgggcgttcggaagaagaacgttat
atccaagctgcattaaaattagcggcggaaaaacggttgccagtggtagcgaccaatgat
gtgtgttttttgcagcaagatgattttgaggcccatgaaattcgtgttgccattcatgat
agttataccttagacgatccaaaacgccccaaattgtatagtgatcagcaatattttcgt
tccgaacaagaaatgtgtgagttatttgccgatataccgagcgctttggaaaattcagtc
ttgattgcgcaacgttgcaatgtaacgattcgtttagggcaatattttttacctcaattt
ccgaccggtgagttaagtacggaagattatttggtgatgaaagcgcgcgaaggtttggaa
gaacgtttgttggtgttgtttccggatgaaaaagtgcggtcggaaaatcggcagaaatat
gatgagcgtctgcaagtggaattggatgtgatcaaccaaatggggttccccggctatttt
ttgatcgtgatggagtttattcagtggtcaaaagataacgatattccggttggaccgggg
cgaggatcgggcgccggatcgttggtagcatattcgttaaaaatcactgatttggatccg
ttagagtttgatttgctttttgaacgtttcctcaatccggaacgggtatccatgccggat
tttgacgtggatttttgcatggatggacgcgatcgcgtgatcgaacatgtggcggaaact
tacgggcgtggtgcggtttcgcagattatcacctttggtactatggcggcaaaagcggtg
attcgtgatgttgggcgcgtattggggcatccttacggatttgtggatcgcatttctaaa
ttaattccatccgatcccggaatgacccttgccaaagcttttgaggcggagccgcggtta
ccggaaatttatgaaagtgacgaagaagttaaagccttgattgatatggcgcggaaattg
gagggggtgacgcgtaatgccggtaagcatgccggtggtgtggtaatttcgccaagtttg
attactgattttgcgccactgtattgtgatagcgaaggaaaacatccggtcacacatttt
gataaaaatgatgtggaatatgctggtttggtgaaatttgacttcttgggtttgcgtaca
cttactatcatcaaatgggcattggatatgattaatgcccgtttggaaaaagaaggcaaa
gcgccggtagatattgccgctattccgttagatgatgaagcatcttttacgttacttaaa
gctgcggaaacaaccgccgtattccagttggaatcgcgtggtatgaaagatttgatcaaa
cgcctacaaccggactgttttgaagatattatcgctttagtggcgttgttccgcccggga
cctttagaatcaggcatggtgcaaaattttattgatcgtaaacatggtcacgaaccggta
gcatatcctgatccggaatatcaacatgaatgtttgcaaccgattttagagccaacttat
ggcgttattgtttatcaagaacaagtgatgcaaatcgcgcaagaattagccggctatacc
ttaggtggtgcggatttgttgcgtcgtgcgatgggtaagaaaaagccggaagaaatggcg
gcacagcgagaaatttttgaaaaaggagcagtggcgaaagggatcgatggtaatttggcg
atgaaaatctttgacttagtggagaaatttgctggttatggatttaataaatctcactcc
gccgcttatgcgcttgtttcctaccaaaccctatggctaaaaaaacattatccggcagaa
tttatggcggcggtgatgacctcggaaatggataataccgataaaattgtggggctatat
gatgaatgtttgcgcatgggattaactgttgtgccaccggatattaatacggggaaacat
cattttagcgtcaacgatcatgggcaaattgtttatggtatcggtgcgattaaaggggtt
ggcgaaggtccgattgaagccttaattgaagcgcgtaatcaaggcggtatttttaaagat
ttatttgatctttgcgctcgggtggatttgaaaaaaatcaaccgtcgtacctttgaaagt
ctaattatgtcgggtgcctttgataaattagggccgcaccgcgcggcgctggcgaaaaat
ttggaagatgcgcttaaagcatccgatcaacacgcaaaagatgaagcgattggacaggtg
gatatgtttggcgtgctaacggaaagtccggaagaagtggaaaatgcttatgctaaaacg
ccgcgttggacagaaaaacaaattttggatggtgagcgcgaaacgctgggattgtattta
agcagccatccaatcagccgctatttgaaagaactttcccattatagtcacacgcgttta
aacgaattggtgccaaattatcgcggacaaaccagtaccgtgagtggtttgatcgtcaat
acgcgctttgctgttaccaaaaaaggcaaccgcattggcattgcttcgctggatgatcgt
gctggacgtttggatattactttatttggcgaagccttggagcgtttcggcgaaaaattg
caaaaagacaatgtggtgattgtgaccggacaagtgagttttgatgatttttcacaaggg
ctaaaaatgtcggttcgtgatttgatgaccttagatgaagcacgcagtcactacgcgaaa
agtttagcgataagtctagaacaaacgcaaattacaccgcactttatcaaaaaactcaaa
gaaattttaacgccttatagcaatggcgcgcttcccattcatgcctattatcaaagccca
caagggcgcgcattattgcgtttcggcatccaatggtccgtcaaaccgaccgatgaatta
ttggcagatttagtggctttattgggtgaaagcgcagtggaattggagtttgagtaa
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