Pasteurella aerogenes: NCTC13378_00036
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Entry
NCTC13378_00036 CDS
T05989
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13378_00036 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paet03400
]
NCTC13378_00036 (mfd)
Enzymes [BR:
paet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13378_00036 (mfd)
DNA repair and recombination proteins [BR:
paet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13378_00036 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
DUF6007
Motif
Other DBs
NCBI-ProteinID:
VEG68895
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All DBs
Position
1:36769..40200
Genome browser
AA seq
1143 aa
AA seq
DB search
MKYFNLDIPIQPQDHKIIGNVLAGADVLAIAEIAEQYSGLTVVVTPDTKSAVRLERVLTE
FTCLPVTFFPDWETLPYDNFSPHQNITSARLSALFYLQNVKQGILILAISTLMQRLCPPD
FLQQNVLLIKKGDNLLIDKLRLQLENAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFR
LDFFDDEIDSIRIFDVDTQRTQTEIEAIDLLPAHEFPTDNKGIEFFRAQFRETFGEIRRD
PEHIYQQISKGTLAAGIEYWQPLFFNQMASLFSYLPMHTLFVELEQLQEQGARFYQDAQQ
RFESRRIDPMRPLLPPDQLWLSLEEVNRQLKYYPRLSLKTEKVRTSVRQKNLPLQALPQL
TIQSQQKEPLQLLRQFIEQFSGNLLFSVETEGRRETLLDLLQPLKLKPKQVAQFSAAKEK
INLLVSRLDRGFILEQDVPLAVICETELLGDRVQQRTRDKRKSVNPDTLIRNLAELKIGQ
PVVHLEHGVGRYGGLITLENAGVAAEYLLLNYANQAKLYVPVASLHLISRYVGGSDETAP
LHKLGSDAWVKARHKAAEKIRDVAAELLDVYAQREAKKGFAFQYDRDEFRQFSATFPFEE
TQDQEMAINAVIADMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLL
AQQHYDNFKDRFANLPVNVEVLSRFKTAKEQKQILQNLAEGKVDILIGTHKLIQSDVKFH
DLGLLIIDEEHRFGVRQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPA
RRLSIKTFVRQADDNVVREAILREILRGGQVYYLHNDVASIENCAEKLTALVPEARITIG
HGQMRERDLERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTKDALKRLEALESLDNLGAGFMLATHDLEIRGAGELLGD
EQSGQIESIGFALYMELLESAVNALKDGREPSLDELTQQQVEIDLRLPALLPEDYLGDVN
MRLSFYKRIAGVSHKHQLDELKVELIDRFGLLPEAAKNLMRIAELRLAAKALKITKIDVT
LQGGFIEFAVNADLDPMKFITLIQQQPTVFKFDGPTKFRFNVPLNEHKVRLEFVENLLKQ
LLE
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattttaatctcgatattcccattcaaccgcaagatcataaaattatcggcaac
gtgcttgccggcgctgacgttcttgctattgctgaaattgctgaacaatattccggttta
acggtagttgtgaccccggatactaaaagtgcggtgcgtttggagcgagttttaacggaa
tttacttgtctgccggtcaccttttttcctgattgggaaaccttgccttatgataatttt
tcgccccaccaaaatattacttcggcacgtttaagtgctttattttatttacaaaatgtc
aaacaaggcatcttgattttagccatttctacgttgatgcaacggttatgcccgccagat
tttttacaacaaaacgttttattaattaaaaaaggcgataatttgctgattgataaattg
cgtttgcaattggaaaatgctggttatcgcgcggtggaacaagtattggaacatggcgaa
tatgcagtgcgcggcgctttgttggatttatttccgatgggaagtgcggtgccttttcgc
ttagatttttttgatgatgaaattgatagtattcgtatttttgatgtagatacgcagcgt
acacaaacggaaattgaggcaattgatttactaccagcacacgagtttccgacagataac
aagggaatcgagtttttccgcgctcaatttcgagagacatttggcgaaatccgtcgcgat
ccagaacatatttatcaacagattagtaaaggtactctcgcggcggggattgagtattgg
caacctttatttttcaatcagatggcaagtctgttttcttatttgccgatgcatacgcta
tttgtggaattggaacaattgcaagaacaaggcgcgcgtttttatcaagatgcgcagcaa
cgttttgaaagccgccgcattgatccgatgcgtccgttattgccgccagatcagttatgg
ttgagcctagaagaagtcaatcgccaactcaaatattatccacgcttgagtttaaaaacg
gaaaaagtgcgaacttctgtgcggcagaaaaatttgccactgcaagccttgcctcaattg
actattcaatcgcaacaaaaagaacctttgcaattgttacgacagtttatcgaacaattt
tctggcaatcttttattttccgtggaaacagaagggcggcgggaaaccctgttggatttg
ttgcaaccgttaaaattaaagccgaaacaagtggcacaattttcggcggcaaaagagaaa
attaacttacttgtcagtcgcttagatcgtggatttattcttgaacaagatgtgcctttg
gcggtgatttgtgaaacggaattattgggcgatcgggtgcagcaacggacacgtgacaaa
cgaaaatctgtcaatccggatacccttattcgcaatttagccgaattaaaaattggtcaa
ccggtcgtgcatttggaacacggggtggggcgttatggcggtttgattaccttggaaaat
gcgggggtggcggcagaatatttgctactaaattatgcaaatcaagccaaattatatgtg
ccggtggcgtctttgcatttgatcagtcggtatgtcggcggttcggatgaaaccgcgcca
ttgcataaattaggcagtgatgcttgggttaaagcgcggcataaagcggcggagaaaatc
cgtgatgtcgcggcagaattattagacgtgtatgctcaacgagaagcgaaaaaagggttt
gcttttcagtatgatcgcgacgagttccgccaattttccgccacgtttccatttgaagag
acccaagatcaagagatggcgattaatgcggtaattgcggatatgtgtcagccaaaagct
atggatcgtttggtatgtggcgatgtaggttttggtaaaacagaagtggcgatgcgcgcg
gcatttttagccgtgatgaatcataaacaggtggcggtattggtacctactaccttattg
gcgcaacaacattatgataattttaaggatcggtttgctaatttgccggtgaatgtagaa
gtattgtcgcgctttaaaaccgccaaggagcagaagcaaattttgcaaaatttggcggaa
gggaaagtcgatattttgatcggaacgcataaattgattcaatccgatgtgaaatttcat
gatctcggtttgttgatcattgatgaagaacaccgttttggtgtgcgtcaaaaggaaaaa
attaaacaacttcgcgccaatattgatattttgacccttactgccacgccgattccacgt
acgttaaatatggcgatgaacggtattcgcgatttgtccattatttcaacgccaccggcg
cgtcgcttgagtatcaaaacctttgtgcgtcaagcggacgataatgtggtgcgcgaggcg
attttgcgtgaaattttgcgcggcggacaggtgtattatttgcataatgatgtggcgagt
attgaaaattgtgcggaaaaattgaccgcacttgtaccggaagcacggattacgattggg
catgggcaaatgcgcgaacgcgatttggaacgggtgatgtcggatttttatcatcagcgt
tttaatgtgttggtttgttcgacgattattgaaaccgggattgatgtgccaactgctaat
acgattattattgaacgcgctgatcattttggactggcgcaattgcaccaattgcgcgga
cgcgttggtcgttcgcaccatcaagcttacgcttatttattaacgccacatccgaaagcg
atgactaaagatgcgttgaaacgcttggaggcattggaaagtttggataatttgggcgcc
ggtttcatgttagcaactcatgatttggaaattcgcggcgccggtgagttgttgggtgat
gagcaaagtgggcaaattgaaagcatcggctttgcgttgtatatggaattattggaaagt
gcagtcaatgcgttaaaagatgggcgcgaaccgtccttggatgaattaacacaacagcaa
gtggaaattgatttgcggctgccggcattgttaccggaagattatttaggcgatgtgaat
atgcgcttgtccttttataaacgcattgccggcgtaagccataaacatcaattggatgag
ctgaaagttgaacttattgatcgctttggattattgccggaggctgcaaaaaatttaatg
cgcattgccgaattgcgtctggcggcgaaagcgttaaaaattacgaaaattgatgtcacg
ttacaaggtggatttattgaatttgcggtaaatgcggatttagatccgatgaaatttatt
acgttaattcaacaacaaccgacagtgtttaaatttgatggaccaacgaaatttcgtttc
aatgtaccgttgaatgagcataaagtgcggttggaatttgtcgagaatttgctaaaacag
ttactagaataa
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