Pasteurella aerogenes: NCTC13378_00443
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Entry
NCTC13378_00443 CDS
T05989
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03420
Nucleotide excision repair
paet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13378_00443 (uvrD)
03430 Mismatch repair
NCTC13378_00443 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paet03400
]
NCTC13378_00443 (uvrD)
Enzymes [BR:
paet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13378_00443 (uvrD)
DNA repair and recombination proteins [BR:
paet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13378_00443 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCTC13378_00443 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
VEG69717
LinkDB
All DBs
Position
1:complement(482381..484567)
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AA seq
728 aa
AA seq
DB search
MDISELLDGLNDKQREAVAAPLGNYLVLAGAGSGKTRVLTYRITWLVAVENISEGSILAV
TFTNKAAAEMRSRIENTLAKYSSQRLFGMWVGTFHSISHRLLRAHHLDAGLPQDFQILDS
EDQLRLVKRLMKSHQYDEKIYPYKQACWYINNKKEEGLRPHQIDDNNDREEREWIKIYKI
YQDACDRAGLVDFAELLLRAYELFLKKPLILQRYQQRFQHILVDEFQDTNNIQYAWIKLL
AGEHGKVMIVGDDDQSIYGWRGAKIKNIHRFLQDFSQAQTIRLEQNYRSTGNILQSANQL
IANNANRLGKNLWTAGEQGEPIDVYAAFNELDEALFVASQINRWLEDGGKLDDCAILYRS
NSQSRVLEEALIRANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVVNTPAR
SIGDRTLDILRNLARERQLTLWQATHIAIQENMLASRSATALLRFIELVNSLHRDTEEMP
LFEQTDFVIKHSGLYTMYQQEKGEKGEVRIENLEELVSATKEFIKPDEAEDMTDLTAFLT
HASLEAGEEQASPHQSYVEMMTLHSSKGLEFPRVFIVGMEEEIFPSSRSMMDMERLEEER
RLAYVGITRAKQKLTLCYAESRRLYAKEERHFPSRFLNELPKECVREVRIRGTVTRAYNQ
AMVGQLKQETLLSDSGWRVGQKVKHEKFGQGTIINIEGAENNTRLQIAFQGQGIKWLIAH
LAKLTLTN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcagaattacttgacggattaaatgataaacaacgggaagcagtagctgcg
cctttaggtaattatttggttttagccggtgcggggagcgggaaaacaagagtattgacc
tatcgtattacatggctggttgcggtcgaaaatatttcagaaggcagtattttagcagtg
acgtttaccaacaaagcagctgccgagatgcgctctcgtatagaaaacaccctcgctaaa
tattcttcccagcgcttattcggaatgtgggtaggtactttccatagtatatcccatcgc
ctcttgcgcgcacatcacttggatgccggattgccgcaagattttcaaattttagacagc
gaagatcaactccgtttagtcaaacgcttaatgaaatctcatcaatacgatgaaaaaatc
tatccttacaaacaagcctgctggtacattaataataaaaaagaagaaggtttgcgccca
catcaaattgatgacaataatgatcgtgaagaacgggaatggattaaaatttataaaatt
tatcaagatgcttgcgatcgcgctggtttggttgattttgccgaattattattgcgagcc
tatgaattatttctaaaaaaacctctgattttgcaacgttatcaacaacgatttcagcat
attcttgtggacgaattccaagataccaataatattcaatatgcatggattaaattatta
gcaggtgaacatggcaaagtgatgattgtcggcgatgatgatcaatccatttatggttgg
cgcggtgcgaaaataaaaaatatccatcgttttctacaagatttttctcaagcacaaacg
atccgtttagaacaaaactatcgctccaccggtaatattctgcaaagtgccaaccagtta
attgctaataacgccaatcgattaggaaaaaatctttggactgccggcgaacaaggtgaa
cctattgatgtctatgctgcatttaatgagttagatgaggcgttatttgttgccagtcaa
attaaccgttggcttgaggatggtggaaagttagatgactgtgcgattttatatcgtagc
aacagccaatctcgcgtactggaagaagctttaattcgcgctaatattccctatcggatt
tatggcggaatgcgcttttttgaacgtcaagaaattaaagatgcgctggcttatttacgc
ttaattgccaatcgacaagatgacgcggcgtttgaacgggtagtcaatacgccggcacgc
agtatcggtgatcgtactttagatattttgcgtaatttagcccgagagcgacaattaacc
ttgtggcaagcaacccacattgcaattcaagaaaatatgttggcgtctcgttccgcaact
gctctgttacgctttattgaattagtcaattccttgcatcgtgatacagaagaaatgccg
ttgtttgaacaaacggattttgtgatcaaacattccggtttgtacacaatgtatcaacaa
gaaaaaggtgaaaaaggcgaagtacgcattgaaaacttggaagaattggtcagtgctacc
aaagaatttatcaaaccggacgaagcagaagatatgacggatttgacggcatttttaaca
catgcctcgctggaagccggtgaagaacaagcttcaccacatcaatcttatgtcgaaatg
atgaccttgcactcctccaaagggttagaatttcctcgtgtgtttatcgtgggaatggaa
gaagaaatttttccaagtagtcgctccatgatggatatggaacgtttagaagaagaacgc
cgcttggcctatgttggtattacacgagccaaacaaaaattgactctatgctatgctgaa
agtcgtcgtttatacgccaaagaagagcgacactttccttctcgatttctcaatgagtta
ccaaaagaatgcgtgcgtgaagtacgtattcgaggaaccgttactcgagcctataatcag
gcaatggttggacaattaaaacaggaaaccttgttatcggatagcggctggcgtgtcgga
caaaaagtcaaacacgaaaaatttggtcaagggacgattatcaatatcgaaggtgccgaa
aataatacccgtttgcaaattgctttccaaggacaagggataaaatggctcatcgctcat
ttggctaaactaacgctaacaaattag
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