Pasteurella aerogenes: NCTC13378_00811
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Entry
NCTC13378_00811 CDS
T05989
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCTC13378_00811 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paet03400
]
NCTC13378_00811 (sbcB)
Enzymes [BR:
paet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCTC13378_00811 (sbcB)
DNA repair and recombination proteins [BR:
paet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCTC13378_00811 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC13378_00811 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC13378_00811 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
VEG70432
LinkDB
All DBs
Position
1:849629..851110
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AA seq
493 aa
AA seq
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MLEYYPFFVYFTGITLLGKFAMQSDFSFFIYDFESFGINPASDRPAQFAGIRTDAHFNII
GEPVMLYCKQTNDYLPSPGAVLVTGITPQECNEKGVSEPEFAARILAEFSQPNTCIMGFN
NIRYDDEMTRYTFYRNFIDPYEYSYKNGNSRWDLLDIVRACYALRPEGINWAYDEDGMPS
FRLEKLTQANGIEHSNAHDAMADVYATIAMAKLIKEKQPKLFQYFFTHRDKKSLAELIDT
ATLTPLVHVSGMLGNYRGNTSWVVPLAWHPSNQNAVIVCDLARDISDLFSKSAVELREIL
YTPKVELEAQGILPVPLKLVHINKCPILAPAKTLLPENAQRLGINRDFCLQNLAKLRQVN
IRDKVIEIFNDDRSFEPSEDVETELYSGFFGYNDKNNMAILRDLPPEKLADHQLTFQDKR
IEPLLFHYRARHFYKTLTRTEQLQWQRYRRRKLEKSAEQFEQDLQKLAQEQQDNPEKLAL
LQQVYEYGVKLLG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgttggaatattatccattctttgtttattttactgggatcacgttattgggtaaattc
gcgatgcaatctgatttttccttttttatttatgattttgaaagttttggtatcaatccg
gcgtccgatcgtccagcgcagtttgccggtattcgtactgatgcgcattttaatattatc
ggcgagccggtgatgttgtattgcaaacaaactaatgattatttaccttcgccaggagcg
gttttggtcacggggattacgccgcaagaatgtaatgaaaaaggggtttccgagccggaa
ttcgccgcgcgtattttagctgaatttagccaaccgaacacctgtattatgggttttaat
aatattcgttatgatgacgaaatgacacgctataccttttaccgcaattttattgatcct
tatgaatatagttataaaaacggaaattcccgttgggatttgttggatattgtgcgtgct
tgttatgccttgcgtccagaggggattaattgggcatacgatgaagacggaatgccatct
tttcggctggaaaaattaactcaagccaatggcattgagcatagtaatgcacatgatgcg
atggcggatgtttatgcgaccattgctatggcaaaacttattaaagaaaagcaacctaaa
ttatttcaatatttttttacgcaccgagataaaaaatctctcgcggaactgatagacacc
gcaacattaacaccgctggttcacgtttccggtatgttaggcaattatcgcggtaatacc
agttgggtagttcctttagcatggcatccgagcaatcaaaatgcggtcattgtatgcgat
ttagcacgcgatattagcgacttattcagtaaaagtgcggtagaattacgcgagatttta
tatacgccaaaagttgagcttgaagcgcaaggcatactgccggttccattaaaattggtg
catattaataaatgtcctattttagcgccggcgaaaactttattacccgaaaatgcgcaa
cgtttaggcattaatcgcgacttttgtttgcaaaatttagctaaattgcgccaagttaat
attcgggataaagtgattgaaatttttaatgatgatcggtcatttgaacccagtgaagat
gtagaaacggaattatacagtggcttttttggctataacgataaaaataatatggcgatt
ttgcgcgatttaccgccggaaaaattagcagatcatcaattaactttccaagacaagcgc
atagaaccattgttatttcattatcgcgccagacatttttataaaaccttaacgcgcacg
gaacagttgcaatggcaaagataccgccggcgaaaattggaaaaaagtgcggagcaattt
gagcaagatttgcaaaaactagctcaagagcagcaagataacccagaaaaattagcttta
ttgcagcaagtgtatgaatatggtgtgaagttattgggataa
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