Pasteurella aerogenes: NCTC13378_01684
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Entry
NCTC13378_01684 CDS
T05989
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
paet
Pasteurella aerogenes
Pathway
paet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13378_01684 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paet03021
]
NCTC13378_01684 (rho)
03019 Messenger RNA biogenesis [BR:
paet03019
]
NCTC13378_01684 (rho)
Transcription machinery [BR:
paet03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC13378_01684 (rho)
Messenger RNA biogenesis [BR:
paet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC13378_01684 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
VEG72153
LinkDB
All DBs
Position
1:1778103..1779365
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AA seq
420 aa
AA seq
DB search
MHLTELKNTPVSELVALGEGQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILP
DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV
NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAP
PKAGKTMLLQNIAQSITHNYPECELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPAARH
VQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAEKRVFPAID
FNRSGTRKEDLLTTPEELQKMWILRKILNPMGEVEAMEFLIDKLMIAKTNEEFFEIMKRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaacagaacttaaaaacacaccagtttctgaattggtggctcttggcgaaggg
caaatgggcttagaaaatttagctcgcttacgcaaacaagacatcgtattcgcgattttg
aaacaacatgccaaaagcggtgaagatatttttggtggcggcgtgttggaaattcttcca
gacggtttcggctttttgcgttcagctgacagttcttatttagccggtccagacgatatt
tatgtatcaccaagtcaaattcgccgttttaacttacaaacgggtgataaaattgaaggt
aaaattcgtccaccgaaagaaggcgaacgctattttgccctccttaaagtggatcaagtc
aacgatgacaaaccggaagtttcccgcagcaaaatccttttcgaaaacttaacacctctc
cacgccaattcccgtttaagaatggaacgcggtaacgggtcaaccgaagatttaaccgcg
cgtattttagatttggcatcgcctatcgggaaagggcaacgtggtcttatcgttgcacca
ccaaaagcgggtaaaaccatgttgttgcaaaatattgcacaaagtatcacccacaattat
ccagaatgtgaacttattgtgttgttgattgacgagcgtccggaagaagtaacggaaatg
caacgttcagtaaaaggcgaagttattgcctccacctttgatgaaccggcagcacgtcat
gttcaagtggcagaaatggtgattgaaaaggcaaaacgctcggtggagcataaaaaagac
gtggttattttactcgactctatcacccgtttagcgcgagcttacaatacagttacccca
gcctctggcaaaatcttatccggtggggtggatgctaacgccttacatcgtccgaaacgt
ttcttcggggcggcgcgtaacgtagaagaaggtggcagcttaaccattatcgccactgct
ttagtcgataccggttccaaaatggacgaggttatctttgaagaattcaaaggaaccggt
aacatggaattgcacttatctcgcaaaattgcggaaaaacgtgttttccctgcgattgat
ttcaatcgttctggtacgcgtaaagaagatttactcaccactcctgaagagttgcaaaaa
atgtggattttacgcaaaatccttaatccaatgggcgaagtggaagcgatggaattcctc
attgataaattaatgattgcgaaaaccaatgaagaattctttgaaattatgaaacggtca
taa
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