Pasteurella aerogenes: NCTC13378_02189
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Entry
NCTC13378_02189 CDS
T05989
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paet
Pasteurella aerogenes
Pathway
paet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13378_02189 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paet03019
]
NCTC13378_02189 (deaD)
03009 Ribosome biogenesis [BR:
paet03009
]
NCTC13378_02189 (deaD)
Enzymes [BR:
paet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13378_02189 (deaD)
Messenger RNA biogenesis [BR:
paet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13378_02189 (deaD)
Ribosome biogenesis [BR:
paet03009
]
Prokaryotic type
rRNA helicases
NCTC13378_02189 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
VEG73005
LinkDB
All DBs
Position
1:complement(2246373..2248217)
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AA seq
614 aa
AA seq
DB search
MTEIQTTFHDLGLPEFILTAVSEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLAQIDTDKKYPQMLVMAPTRELAIQVADACEQFVKHAKGMRIVTLYGGQRYDIQLR
ALKQGAQVVVGTPGRILDHIRRGTLDLSELQSIVLDEADEMLRMGFIEDVETVMAELPEN
HQTALFSATMPEPIRRITKRFMQEPQEVKIQSNQQTAPDITQSCWYVHGFRKNEALLRFL
EVEDFDAAIIFTRTKTGTLDITELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVFNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI
ERLMKKPIEEVEVPNHEALQACRRKKFVAKITKQLEHHDLDMYRGLLEDLFTADQDQEDI
AAAMLMLLQGKQKLILPPDPVIEKRRRGERGERSDRRERRENSRSAERRGYGNPQPMDLY
RVEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQVFGKTR
ILNKQMRMTFVGEAHNNAHGHERGNERSYDRDSGKRKGRSNSETRFGKPERKFKEKNDRS
FNERAPRELRERRK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaattcaaaccactttccatgatttaggcttgcctgaatttattcttactgct
gtttccgaaatgggctttgtaaccccttcaccaattcaacaagcatgtattccacattta
ctaaacgggcgcgacgtactgggtatggcacaaaccggtagcggaaaaacagcggcgttc
tcactcccgttattagcacaaattgacaccgataaaaaatatccacaaatgttagtgatg
gcaccaacccgtgaacttgcaattcaagtggctgatgcttgcgaacaatttgtaaaacac
gccaaaggcatgcgtattgtcactctatatggcggtcaacgttatgacattcaattgcgc
gcactaaaacaaggcgcacaagtcgtagtcggtactcccggacgtattttagatcatatc
cgtcgtggtacactggatttatctgaattgcaatctatcgtattggatgaagccgatgaa
atgttacgcatgggctttattgaagatgttgaaaccgtgatggcggaattacccgaaaat
caccaaactgcgctattctcagcgaccatgccggaaccaatccgtcgcattaccaaacgc
tttatgcaagagccgcaagaagttaaaattcaatctaatcaacaaactgcaccggatatt
acacaaagttgctggtacgttcacggttttcgcaaaaatgaagcgcttttgcgtttcctt
gaagtggaagattttgatgccgcaattattttcacccgcactaaaaccggtactctagat
atcaccgaattattggaaaaacacggtttccgtgccgcagcgttaaatggcgacatgacc
caacaattacgtgaacaaacccttgatcgtttacgtaacggaagtttggatatcttagtt
gccaccgacgttgccgcacgtggtttggacgtagaacggataagcttggtatttaactat
gatattccacttgatgcagaaagctatgtacatcgtatcggtcgtaccggacgagccgga
cgtgccggacgtgctattcttttcgtggaaccgaaagaacgtcgtttgcttggtaatatt
gaacgattaatgaaaaaaccgattgaagaagtcgaagtaccgaatcatgaagcgttgcaa
gcctgtcgccgcaaaaaatttgtggcaaaaattaccaaacagctagaacatcatgatctt
gatatgtaccgaggtttgctggaagacttgtttaccgccgatcaggatcaagaagatatt
gcagcagcaatgttaatgctattacaaggtaaacaaaaactgattttaccaccggatcct
gttatcgaaaaacgccgtcgcggagaacgtggtgaacgcagcgatcgccgtgagcgtcgt
gaaaattcccggtcagcagaacgccgcggctacggaaatccacaacctatggatttatac
cgcgttgaagttggacgtgcggatggggtagaagtgcgccatattgtcggcgctatcgcg
aatgaaggcgatattaacagccgctatattggacacattaaattatacgatgactattct
accattgaacttccgcaaggaatgccgaaagaattattacaagtctttggcaaaacacgc
attttaaacaaacaaatgcgcatgacttttgtcggcgaagcccataataacgcccacggg
catgaacgtggtaatgagcgcagttatgatcgcgacagcggtaaacgtaaaggcagaagt
aacagcgaaactcgcttcggcaaaccagagcgtaaatttaaagaaaaaaatgaccgctct
tttaacgaacgtgccccaagagagctccgtgaacgtagaaaataa
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