Pseudomonas aeruginosa PA38182: BN889_00668
Help
Entry
BN889_00668 CDS
T03031
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paeu
Pseudomonas aeruginosa PA38182
Pathway
paeu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paeu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN889_00668 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paeu03021
]
BN889_00668 (rpoD)
Transcription machinery [BR:
paeu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN889_00668 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Sos7
Motif
Other DBs
NCBI-ProteinID:
CDI88746
LinkDB
All DBs
Position
complement(663595..665448)
Genome browser
AA seq
617 aa
AA seq
DB search
MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEV
EPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALK
KHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDAR
MPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVA
EIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMAT
SESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctgaaagagttgatcgcccgaggccgtgag
cagggatacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgttgctggccgaggcggataccgacgaagccgcagcggaa
gaagccgcagcggccctggccgcggtggaaagcgacatcggtcgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccagttcccg
ggcacggtggacagcatcctggccgactacaatcgcatcgtcgccgaaggcggtcgcctc
tccgacgtcctcagcggctatatcgatcccgatgacggcagcctgcccgccgaagaggtg
gagccggtcaacctgaaggacgattccgccgactcgaaagagaaggacgacgaggaagaa
gaaagcgacgacagcagcgacagcgacgacgaaggcgacggcggtccggatccggaagaa
gcccgcctgcgtttcaccgcggtctccgagcagctcgacaaggccaagaaggccctgaag
aagcacggtcgcggcagcaagcaggccaccgccgaactcaccggcctggccgagctgttc
atgccgatcaagctggtccccaagcagttcgacgccctggtcgcccgcgtgcgctccgcc
ctggaaggcgtgcgcgcccaggaacgcgccatcatgcagctctgcgtgcgtgacgcgcgc
atgccgcgtgccgacttcctgcgcctgttcccgaaccacgagaccgacgagaagtgggtc
gacagcgtcctgaagagcaagccgaagtacgccgaggccatcgagcgcctgcgcgacgac
atcctgcgcaaccagcagaagctggcggccctggaaagcgaggtcgagctgaccgtcgcc
gagatcaaggaaatcaaccgcgcgatgtcgatcggcgaagccaaggctcgccgggcgaag
aaggaaatggtcgaggccaacctgcgcctggtgatttccatcgccaagaagtacaccaac
cgcggcctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctccacctacgccacctggtggattcgc
caggcgatcacccgttcaatcgccgaccaggcacgcaccatccgcatcccggtgcacatg
atcgagacgatcaacaagctcaaccgcatctcccgccagatgctccaggaaatgggtcgc
gagcccaccccggaagagcttggcgagcgcatggacatgcctgaggacaagatccgcaag
gtactgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagat
tcgcacctgggcgatttcatcgaggactccaccatgcagtcgccgatcgagatggcgacc
agcgagagcctcaaggaatccacccgcgaagtcctcgccggcctcactgcccgggaagcc
aaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtgacccgcgagcggatccgccagatcgaagccaaggcgctgcgc
aagctgcgccatccgtcgcgaagcgagcacctgcgctccttcctcgacgagtga
DBGET
integrated database retrieval system
