Pseudomonas aeruginosa PA38182: BN889_04403
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Entry
BN889_04403 CDS
T03031
Symbol
hrpB_1
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paeu
Pseudomonas aeruginosa PA38182
Brite
KEGG Orthology (KO) [BR:
paeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeu03019
]
BN889_04403 (hrpB_1)
Enzymes [BR:
paeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BN889_04403 (hrpB_1)
Messenger RNA biogenesis [BR:
paeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BN889_04403 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
HA2_N
Motif
Other DBs
NCBI-ProteinID:
CDI92434
LinkDB
All DBs
Position
complement(4605093..4606763)
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AA seq
556 aa
AA seq
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MTIEGVRVVVDSGLERVPKFDPRSGMTRLDTQRISKASATQRAGRAGRLEPGVCYRLWSE
SQHDQMAGYSTPEILQADLAALALQLARWGMKPEEMTWLDQPPSAPFGQARDLLKRLGAL
DDAGQLTPHGSAMSELPAHPRIAHMLIKGNAMGLDDLACNIAALLGEKDILRGAGADLHT
RLSALSGEQHPRRSGGSLQRVKQSARQYRSLLRGKASSPVSEPDHPRWVGCLLAFAYPDR
IGLQRRASAFEYRLSNGRAAVFSEPDALTKHEWVVVADLGSRQGQREERIYLASDLYPAL
FDDELADLVRSVDEVDWDEREGVLKAERQLKVGQLILSTKALPSLDEQTRSLALVNLVRR
KGIELLPWSPELRQWQARVDLLRQLDIQSGQAQSKWPDLSDANLLETLEDWLTPYLGKVT
RLSHFSQLDLSSIVRNLLPWPLPQELETQAPQAIQVPSGSNIRIDYSQHPPILAVRLQEL
FGLAETPRIAQGKQPLMLHLLSPARRPVQVTQDLANFWRSTYVEVKKDLKGRYPKHYWPE
NPLVAEATARAKPRGT
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgaccatcgaaggcgtcagggtcgtggtggacagtggtctcgagcgagtgccgaagttc
gatcctcgcagtggcatgacccgactcgacacccagcgtatctcgaaggccagtgctacc
cagcgtgcggggcgggcagggcgcttggagccaggtgtctgctaccgcctgtggtcggag
tcgcagcacgatcagatggccggctacagcaccccagagatcctgcaggcggatctcgca
gccctggctctccagctggcccggtggggaatgaagccggaagagatgacctggctcgac
caacctccatcagctcctttcggccaagccagagacctgttgaagcgcctgggcgcactc
gacgatgcgggacagctcacaccgcacggctcggccatgagcgagcttccagcgcatcca
cggatcgctcacatgctcatcaaaggcaatgcgatgggcttggatgacctggcgtgcaac
atcgcggcgctgctcggtgagaaggacatcctccgtggagccggtgctgaccttcacacc
aggctgagtgctttgtcaggcgagcaacatccacgtcgtagtggtggttccctccagcgg
gtgaagcagtctgctcggcagtaccgatctctcctacgtgggaaggcctccagccctgtc
agcgagcccgatcacccacggtgggtagggtgcctcctggcgtttgcctaccctgaccga
atcggcctgcagaggcgtgcaagtgcattcgaataccgtctctccaacggtcgtgctgcg
gtgttctcagagcccgatgccctcaccaagcacgagtgggtggtggtggccgacctgggt
agccggcaagggcagcgcgaagagcggatctacctggcgagtgacctctatccggccttg
ttcgatgacgagctggctgaccttgtgaggtctgtcgatgaggtcgactgggacgaaagg
gaaggtgttctgaaggctgagcggcagttgaaggttgggcagctcatcttgtcgacgaaa
gctctgccgagtcttgatgagcaaacccgttcgcttgccctggtcaacctggtgaggcgc
aagggcatcgaactcctcccgtggagccccgagctacggcagtggcaggcgcgggtcgac
ctactgcgtcagctggatatccagagtggccaggcacagagcaaatggcctgatctcagc
gatgccaaccttctggaaacgctggaagattggctcacgccgtatctgggtaaagtcacg
aggctcagtcatttcagccagctggatctgtcttcgatagtcagaaacctcctgccgtgg
ccgcttccacaggagttggagacccaggcgcctcaagcgatccaggtgccgtccggatcg
aatatccgcatcgactactcgcagcatccgccaatcctcgcagtacggctgcaggagctg
tttggcctggcagaaaccccacgcatagcccagggcaagcagccgctgatgttgcatctc
ctgtcgccggcccgcaggcctgtgcaggtcacccaggatctcgccaacttctggcgcagc
acctatgtcgaggtgaagaaagatctcaaaggtagataccccaagcattattggcccgaa
aatccattggtggccgaagccactgctcgtgcgaagcctagagggacgtag
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