Pseudomonas aeruginosa PAO1-VE13: N297_3987
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Entry
N297_3987 CDS
T03097
Name
(GenBank) hypothetical protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paev
Pseudomonas aeruginosa PAO1-VE13
Pathway
paev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N297_3987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paev03019
]
N297_3987
Enzymes [BR:
paev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N297_3987
Messenger RNA biogenesis [BR:
paev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N297_3987
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
TMEM260_2
Motif
Other DBs
NCBI-ProteinID:
AGY73454
LinkDB
All DBs
Position
4321051..4322622
Genome browser
AA seq
523 aa
AA seq
DB search
MLYTGARSFLNHYEIAVLKALKKIFGKADGTQPQSGSSPVPQGPAGATAKGTAPTGEKPT
EKRPRKPRPPRADNESGAPRAAEKAEKAEKPAKPAGKEGRDAKPRTDKPRRERKPKPVDN
WKLEDFVVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQ
TGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLN
VMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM
GFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQ
HVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQH
KRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS
GTSISFAGEDDAFALPPIEELLGRKITCEMPPAELLKPVPRKH
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctttacactggcgcccgttcattccttaaccactacgagatcgccgtgctcaaagca
ctcaagaaaatcttcggcaaggccgacggaacccagccgcagagcggttcctccccggtc
ccgcaaggccctgccggcgctaccgcgaaaggtaccgcccccaccggcgaaaagccgacc
gagaaacgcccacgcaaaccgcgccccccgcgcgccgacaacgagtccggcgccccgcgc
gccgctgaaaaggccgagaaagccgaaaagcccgccaaacccgccggcaaagaaggccgg
gacgccaagccgcgcaccgacaagccgcgccgcgaacgcaagccgaagccggtggacaac
tggaagctggaagacttcgtggtcgaaccgcaggaaggcaagacccgcttccacgacttc
aacctcgccccgagcctgatgcacgccatccatgacctcggcttcccctactgcacgccg
atccaggcgcaagtactgggcttcaccctgcgcggccaggacgccatcggccgcgcccag
accggcaccggcaagaccgccgcgttcctcatctcgatcatcacccagttgctgcagacc
ccgccgccgaaagagcgctacatgggcgagccgcgcgcgctgatcatcgccccgacccgc
gaactggtggtacagatcgccaaggacgccgcggcgctgaccaagtacaccgggctgaac
gtgatgaccttcgtcggcggcatggacttcgacaagcaactcaagcagctggaagcgcgc
ttctgcgacatcctggtagccactccaggccgtctgctggacttcaaccagcgcggcgag
gtgcacctggacatggtcgaggtgatggtcctcgacgaagccgaccgcatgctcgacatg
ggcttcatcccgcaggtccggcagatcatccggcagaccccgcacaagggcgaacgccag
accctgctgttctcggcgaccttcaccgacgacgtgatgaacctcgccaagcagtggacc
gtcgatccggcgatcgtcgagatcgagccggagaacgtcgccagcgacaccgtcgagcag
catgtctacgccgtggccggcagcgacaagtacaagctgctgtacaacctggtggcgcag
aacaactgggaacgggtgatggtcttcgccaaccgcaaggacgaagtccgccgcatcgag
gaacgcctgaccaaggacggcatcagcgccgcccagatgtccggcgacgtgccgcagcac
aagcgcatccgcaccctggaaggcttccgcgaaggcaagatccgcgtcctggtggcaacc
gacgtggccggccgcggcatccacatcgacggcatcagccatgtgatcaacttcaccctg
ccggaagacccggacgactacgtgcaccgtatcggtcgtaccggccgcgccggcgcctcg
ggcacctcgatcagcttcgccggcgaggacgatgccttcgccctgccgccgatcgaagaa
ctgctgggccgcaagatcacctgcgagatgccgccggccgaactgctcaagccggtaccg
cgcaagcactga
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