Pseudomonas aeruginosa PAO1-VE13: N297_4401
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Entry
N297_4401 CDS
T03097
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paev
Pseudomonas aeruginosa PAO1-VE13
Pathway
paev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N297_4401 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paev03021
]
N297_4401 (rpoC)
03400 DNA repair and recombination proteins [BR:
paev03400
]
N297_4401 (rpoC)
Enzymes [BR:
paev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N297_4401 (rpoC)
Transcription machinery [BR:
paev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N297_4401 (rpoC)
DNA repair and recombination proteins [BR:
paev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N297_4401 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF3150
gerPA
Motif
Other DBs
NCBI-ProteinID:
AGY69990
LinkDB
All DBs
Position
complement(4772274..4776473)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVHELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSG
QASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVL
GRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRL
HNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQR
VSASEAEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgcttaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
cgtattggcctggcttcgcccgagatgattcgttcctggtctttcggcgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcggcccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgtggaagtcgccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgcgatatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctggaaaagggccagctgctg
aacgacgagcaatacttcgaggccctcgaagagttcggtgacgatttcgatgctcgcatg
ggcgccgaagctgttcacgaactgctcaacgccatcgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaacaagcctgagtggatggtcctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcaaggtcgcttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctggagctgttcaagccgttc
attttcggcaagctggaaggtcgtggtatggccaccaccatcaaggccgccaagaaaatg
gtcgagcgcgagctgcccgaggtctgggacgttctcgccgaagtcatccgcgagcatccg
gttctcctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctcatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtccacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gttccgtcgcaggacgtggtaatgggtctgtactacatgacccgtgaagcgatcaacgcg
aagggcgagggcatggccttcgccgacctgcaggaagtcgaccgcgcctaccgcagcggc
caggcgtccctgcacgctcgcgtaaaagtgcgcatcaacgaaaagatcaagggtgaagac
ggccaactgaccgccaatacccgtatcgtcgacaccaccgtcggccgcgcgctgctgttc
caggtcgttccggccggcctgccgttcgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccactgctatcgcgtggtgggtctgaaggacaccgtcatcttc
gccgaccagctgatgtacaccggtttcgcctactcgaccatttccggcgtgtccatcggc
gtcaacgacttcgtcatcccggacgagaaggcgcggatcatcaacgccgccaccgacgaa
gtgaaggagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctgtggtcgaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgatcgcgagggcaaggaagtcgaccaggagtccttcaac
tccatgtacatgatggctgactcgggtgcgcggggctccgcggcccagatccgtcagctg
gcaggtatgcgtggcctgatggccaagccggacggctcgatcatcgagaccccgatcacc
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctccacccacggtgctcgt
aagggtctggcggataccgcgctgaagaccgcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggatctggtagtgaccgagatcgattgcggtaccgagcacggcctg
ctgatgtcgccgcacatcgaaggcggcgacgtggtcgaaccgctcggcgagcgcgtgctc
ggccgtgtgatcgcgcgcgacgtgttcaagccgggcagcgacgaggtcatcgtgccggcc
ggcaccctgatcgacgagaagtgggtggacttcctcgaagtgatgagcgtcgacgaagtg
gtggtgcgttccccgatcacctgcgaaacccgtcatggcatctgcgccatgtgctacggc
cgcgacctggcccgtggccatcgcgtcaacatcggcgaggcggtcggtgtcatcgctgcc
cagtccatcggtgagccgggcacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctccgcggccgacaacgtccaggtgaagaacggcggcaccatccgcctg
cacaacctgaagcatgtggttcgtgccgacggcgcgctggtcgcggtttcccgttccggc
gaactggcggttgccgacgacttcggtcgcgagcgcgagcgctacaagctgccgtacggt
gcggtgatctcggtcaaggaaggtgacaaggtcgacccgggcgctatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgaggtggacggtaccgtggccttcgtgggcatg
gaagagggcatcaccgtcaagcgtcagaccgacgaactgaccggcctgaccaacatcgaa
gtgatggatccgaaggaccgtccggctgccggcaaggacatccgtccggccgtgaagctg
attgatgccgcgggcaaggacctgctgctgccgggtaccgacgtaccggcgcagtacttc
ctgccggccaacgccctggtcaacctgaccgacggcgccaaggtgagcatcggtgacgtt
gtcgcgcgtatcccgcaggaaacctcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaggctcgtcgtccgaaagagccttcgatcctggcggaaatcagc
ggcaccatctccttcggcaaggagaccaagggcaagcgccgcctggtcatcacgccgaac
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtgaaccgcggcgaagtcatctccgacggtccgagcaacccgcacgacatc
ctgcgcctcctgggcgtgagctcgctggcgaagtacatcgtcaacgagattcaggacgtc
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgaagtcagcgagtccggcgactccagcttcatcaaaggcgaccaggtg
gaactcacccaggtgctggaagagaacgaacagctcggtaccgaggacaagttcccggcc
aagtacgagcgggttctgctgggtatcaccaaggcctccctgtcgaccgagtcgttcatt
tccgcggcgtcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaccggcaag
cgcgacttcctgcgtggtctgaaagagaacgtggtcgtgggtcgcctgatcccggccggt
accggtctggcttaccacagcgaacgcaagcgtcagcgcgacctcggcaagccgcagcgt
gtgagtgccagcgaggcggaagccgcactgaccgaagcgctgaactcgagcggtaactaa
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integrated database retrieval system
