Paraneptunicella aestuarii: KIH87_08735
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Entry
KIH87_08735 CDS
T07748
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paew
Paraneptunicella aestuarii
Pathway
paew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIH87_08735 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paew03019
]
KIH87_08735 (rne)
03009 Ribosome biogenesis [BR:
paew03009
]
KIH87_08735 (rne)
Enzymes [BR:
paew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KIH87_08735 (rne)
Messenger RNA biogenesis [BR:
paew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIH87_08735 (rne)
Ribosome biogenesis [BR:
paew03009
]
Prokaryotic type
rRNA processing factors
KIH87_08735 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UAA40402
LinkDB
All DBs
Position
complement(2103752..2106838)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQKLYDLDIESPGHEQKKANIYKGIITRIEPSLEAVFVNY
GAERHGFLPLKEIAKTYFPSDYKFEGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTDLKDALDKLNLPNGMGLIVRTAGVGKSYEEL
EWDLNIQLTYWQAIEKVSESRKAPFLIHQESNVIIRAIRDYLRRDIGEILIDNDTAYQQV
LEHMKLLRPDFVNKVKRYKNDIPLFNHYQIENQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALNTNLEAADEIARQLRLRDLGGLLVIDFIDMTPSRHQREVEN
RLKEAVAQDRARVQLGRISRFGLLEMSRQRLRPSLGEASTHVCPRCSGQGTIRSVESSAL
SILRLMEEEALKENTKEVRANVPVEVASYLLNDKRNTLRKIEDRLKVTLLILPKRELETP
HYEVSRVRNDDTVIESSSKLAPVQPEKDDSSSSSSESVVREQPALQGFVAPSPAAPVVKP
ASKSFLTVFFAWLGSLFSSDGKSGNNSKDRNNRNAKGNSRRRPQRNQRNHRNGKSERPER
TERAERPERKPRSDQDKNLKKGDANTEAKNTKPRRNDQERRSDQAKPQAQTDNKDIEAKN
EKKLVERRKRRERKRSVRVSDPNALVTADVTAQETSKQEQAIQAQPVQEPLVQQTQETSE
TKAETQVTDENSATQTSEAPKRRTRSRKKPVDADVKNQVNETAPEYQLNEPATVSTEAKA
EADVQTAPVAQEVTAIPVPSTDTNKVEAAETENSESDSSGQVALQFEEVETKAQVNSETV
NTDKEATSESTVETISEEKPVQETASESAAATVVTIDAVNQPENTVEKQIESTPVEATES
KEQVQENAEPTQTDIFHAADNQDIKKEEVTEPAPVAEVKAEENTADEEKQTQSREKSSKG
NYKAKNSLKRASYPMARPQSIDTPIQEIQISALDESMRPEFAKSGRSAAIVSLTNKANAP
AARPEAQA
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgcaactcagcaagaggaaatgcgagttgctctggttgat
ggtcaaaagctttatgatttagatatcgaaagcccgggccacgaacagaaaaaagcgaat
atttacaaagggattatcactcgcattgaaccaagtctggaagccgtttttgttaattat
ggcgctgaacgccacggattccttcctctcaaagaaatagccaaaacctacttcccatca
gattacaaatttgaaggccgtcctaacatcaaagatgtggtgaaagaaggccaggaagtt
atcgttcaaatcgacaaagaagaacgcggtcaaaaaggcgcagccttaacaacctttatc
agcttggcgggtagctacctggtattaatgcccaacaaccctcgtgccggtggtatttcc
cgtcgcattgaaggtgatgagcgtacagatttaaaagatgccctggataaactaaatctg
cctaatggcatgggtttaattgttcgtactgcgggcgttggcaaatcctatgaagaatta
gaatgggatttaaatatccagctgacttattggcaagccattgagaaagtgtcggagtca
cgtaaagcaccgttccttatccatcaggaaagtaacgttattatccgtgcaattcgcgac
tatttacgtcgtgatatcggcgaaattctgattgataacgatacagcataccaacaagtg
ctagagcacatgaagctgctacgtccggatttcgttaacaaggtcaaacgctataagaac
gacattccactattcaatcactatcagattgaaaaccagattgaatccgctttccaacgt
gaagtcagacttccttctggcggttcaattgttattgatccaaccgaagccctgacctct
attgatatcaactcctctcgtgcaacgaaaggcggtgatattgaagaaaccgcattgaat
acaaacctggaagcagccgacgaaatcgctcgccagctcagacttcgagatttgggtgga
ttgctggttatcgacttcattgacatgacaccatcacgtcaccaaagagaagtggaaaac
cgcttaaaagaagcagtagctcaagacagagccagggtgcaattgggacgaatttcccgt
tttggtctactggaaatgtcacgccagcgtctgcgcccgtctttgggtgaagcgtcaacg
catgtgtgcccacgttgttctggtcaaggcaccattcgtagcgtggaatcttcagccctg
tcaatcttgcgtttgatggaagaagaagcgttaaaagagaacactaaagaagtaagagcg
aacgtacctgtagaagtagcctcttacctattgaacgacaaacgtaataccctgcgtaaa
attgaagatcgcttgaaagtcacattgttgattttacctaagcgagaactggaaacgcct
cattatgaagtttccagagtgcgtaatgatgacactgttattgaatccagttcaaagtta
gctccggttcaaccagagaaagatgacagctcaagttcctccagtgaaagcgttgttaga
gagcaacctgcgctacagggttttgtcgctccatctccagcagcaccagttgttaaacct
gcatccaagagtttcttgactgttttctttgcctggttaggtagcctgtttagttccgat
ggaaaatcaggtaataacagcaaagaccgcaacaaccgcaatgccaagggcaattcacgc
agacgtccacaacgtaaccagcgcaatcatcgcaacggtaaatctgagcgcccagagcgt
acagaacgagctgagcgccctgagcgcaaacctcgaagtgatcaagacaaaaaccttaaa
aaaggtgatgcgaataccgaggctaaaaataccaagccaagaagaaacgaccaggaaaga
agaagcgaccaagcaaagcctcaggctcaaacggataataaagacattgaagccaagaat
gagaaaaagcttgtcgaacgtcgtaagcgtagagagcgcaaacgcagtgtaagagtgtca
gacccaaatgctctagtcaccgcggatgtaacagctcaggaaacgtctaaacaagagcaa
gcaattcaggcacagcctgttcaagagcctcttgttcaacaaacccaagagacttctgaa
actaaagcagaaacgcaagtaactgacgaaaatagcgcaactcaaacatctgaagcgcct
aaacgtcgtactcgcagccgtaaaaagccagtagatgctgacgttaaaaatcaggtgaat
gaaacggcaccagaatatcaattaaacgagcctgcaacagtaagcactgaagcaaaagct
gaggctgatgttcaaacggctccagtagcgcaagaagtaacagcaatccctgttccatca
actgacacaaataaagttgaagcagcggaaactgaaaacagcgaatcagatagctctgga
caagttgcgttgcaatttgaagaagttgagacaaaagcacaggttaattctgaaacagta
aatactgataaagaagccacctcagaaagcactgttgagactatttcggaagaaaagccg
gtgcaagaaacagcttctgaaagtgcagctgctaccgtcgtaactattgatgcagttaat
cagccagagaatacggtagaaaagcagatagaatctacacctgtagaagctactgaaagc
aaagagcaagttcaggagaatgctgaaccaactcaaactgacattttccacgccgccgac
aatcaagatatcaagaaggaagaagtaactgaacctgctccggtggcagaagttaaagca
gaggaaaacactgcggatgaggaaaagcaaactcagtccagggaaaaaagcagcaaaggt
aactacaaggctaagaacagcttgaaacgagcgtcttatcctatggcaagacctcaaagc
attgatacacctattcaagaaattcagatttctgctttagatgaatctatgcgtccagaa
tttgccaaaagtggtcgaagcgctgccatagtaagtttgacaaataaagccaacgctcca
gcagcacgaccggaagcgcaagcttaa
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