Paracoccus aestuarii: JHW48_06400
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Entry
JHW48_06400 CDS
T08926
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paex
Paracoccus aestuarii
Pathway
paex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW48_06400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paex03019
]
JHW48_06400
Messenger RNA biogenesis [BR:
paex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JHW48_06400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WCR00305
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Position
1247805..1249481
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AA seq
558 aa
AA seq
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MAERLIYLPLGGAGEIGMNAYVYGHGAPGKERLILVDLGVTFGDMEGSPGIDLIMPDLTW
LEKNRHRLEAIFVTHGHEDHIGAIAHLWKRLDVPIYARRFTGTLVRLKMEEHGLPAEAVT
IVEPRPEIVKAGPFSVQFMPISHSIPESSALIIDSPAGRIVHTGDFKMDVTPVVGDAFDA
IGLSEIAAEGKGVKILACDSTNIFSTHPGRSEAVLATPILEWVMAQKNLVVATTFASNIA
RLKTLADAARASGRKICLLGRAMRRMVSVGFDTGILKDFPETIGPEEAAKLPRNKVMLLV
TGSQGERRAASAQLSRGRYLGLSLQEGDSFLFSSKTIPGNEKSVGRIMNALSESGVDVWD
ADDGLYHVSGHANRPDIEAMHDLLKPRVVIPMHGEHLHLREHALLARAKGMTAEVVTNGT
MLDLTGDKPKVVDHVETGRLYLDGNQLIGAMDGVVRDRIRMALNGHAMISVIVDEDDNVL
PDAWVELMGLPTRTRSGGELSGQIESELSEFLERADGRTVRDDGKLDEAIRKITRQVAME
EIGKKPEVTVIISRLMAD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcgcctgatctacctgcccctgggcggcgcgggtgaaattggaatgaacgcc
tatgtctatgggcatggcgcgccgggcaaggaacgcctgatcctggtggatctgggcgtg
accttcggcgacatggagggcagcccggggatcgacctgatcatgcccgacctgacctgg
ctggaaaagaaccgccaccggctggaggcgatcttcgtcacccatggccacgaggatcat
atcggcgccatcgcgcatctgtggaagcggctggatgtgccgatctatgcgcgccgcttc
accggcacgctggtgcgcctgaagatggaggagcacggcctgcccgccgaggccgttacc
atcgtcgagccgcgccccgagatcgtcaaggccgggccgttctcggtccagttcatgccg
atcagccattcgatcccggaaagcagcgcgctgatcatcgacagccccgcgggccggatc
gtgcatacgggcgatttcaagatggacgtgaccccggtcgtgggcgacgccttcgacgcg
atcggcctgtccgagatcgccgccgagggcaagggcgtcaagatcctggcctgcgacagc
acgaacatcttctcgacccatcccggccggtccgaggccgtgctggccacgccaatcctg
gaatgggtgatggcgcagaagaacttggtcgtcgccacgaccttcgccagcaacatcgcg
cggctgaagacactggccgatgcggcccgcgcctcgggtcgcaagatctgcctgttgggc
cgggcgatgcggcgcatggtcagcgtgggcttcgacacgggcatcctgaaggatttcccc
gagacgataggcccagaggaggcggccaagctgccccgcaacaaggtcatgctgctggtc
accggcagccagggcgaacgccgcgccgccagcgcgcagctgtcgcgcggccgctatctg
gggctgtcgctgcaggagggggacagcttcctcttcagctccaagaccattccgggcaac
gagaagtcggtcggccggatcatgaacgcactgagcgaatccggggtcgatgtgtgggat
gccgatgacggcctctatcacgtgtcgggccatgcgaaccgccccgatatcgaggcgatg
catgacctgctgaagccgcgcgtcgtgatcccgatgcatggcgagcatctgcatctgcgc
gagcatgcgctgctggcccgcgccaaggggatgaccgccgaggtggtgacgaacggcacg
atgctggacctgaccggcgacaagcccaaggtcgtggatcatgtcgagaccgggcggctc
tatctggacggcaaccagctgatcggtgcgatggacggtgtggtccgtgaccgcatccgc
atggcgctgaacgggcatgcgatgatcagcgtgatcgtggacgaggacgacaacgtcctg
cccgatgcctgggtcgagctgatgggcctgcccacccgcacccggtcgggcggcgagctg
tcgggccagatcgaatccgagctgtccgagttcctggagcgcgcggatggccgcacggtc
cgcgacgacggcaagctggacgaggcgatccgcaagatcacccgtcaggtggcgatggag
gagatcggcaagaagcccgaggtcaccgtcatcatcagccgcctgatggccgactga
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