Paracoccus aestuarii: JHW48_07005
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Entry
JHW48_07005 CDS
T08926
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paex
Paracoccus aestuarii
Pathway
paex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHW48_07005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paex03019
]
JHW48_07005
Enzymes [BR:
paex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHW48_07005
Messenger RNA biogenesis [BR:
paex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHW48_07005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
AAA_22
DUF7069
DEDD_Tnp_IS110
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WCR00692
LinkDB
All DBs
Position
complement(1365287..1366525)
Genome browser
AA seq
412 aa
AA seq
DB search
MGIDHRINANIAALGLTQPTPIQAQGIPAVVEGRDVLGLAQTGTGKTAAFGLPMLTRLIK
YGKKPDPKTCRALILAPTRELATQIATNIDAFAEGTPIRSFRVVGGASINVQTERLSRGV
DVLIATPGRLMDLIERRAISLEATTYLVLDEADQMLDIGFIHTLRKIARMLPRERQTLMF
SATMPKLMSELSDTYLTNPVKVAVNPPGQAAKKIEQGVHFTTQGDKATLLAEYMSKHTDE
LAMVFGRTKHGCEKLAKLLEKWGFAVAAIHGNKSQGQRERALEAFRKGETKVLVATDVAA
RGLDIPEVAHVYNYDLPNVPENYVHRIGRTARAGREGRAVAFCAPAELGELRAIEKAMKT
TIPVIGGTAPSAAMVAAAGPAGGPQRGRGKPMEGGNKRPARRPSRAPKSRQA
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgatcaccgcatcaacgccaatatcgcggcgcttggcctgacgcagcccacg
cccatccaggcgcagggcatccccgccgtggtcgaaggccgcgacgtgctgggcctggcc
cagaccggcaccggcaagacggcggccttcggcctgcccatgctgacccggttgatcaaa
tacggcaagaagcccgaccccaagacctgtcgcgcgctgatcctggcgccgacccgcgag
ctggccacccagatcgcgaccaatatcgacgccttcgccgaaggcacgccgatccggtcc
ttccgcgtcgtgggcggcgcctcgatcaacgtacagaccgagcggctgtcgcgcggcgtg
gacgtgctgatcgcgacgccgggccgcctgatggacctgatcgagcgtcgcgccatcagc
ctggaggccaccacctatctggtgctggacgaggccgaccagatgctggacatcggcttc
atccacaccctgcgcaagatcgcgcggatgctgccccgtgaacgccagacgctgatgttc
tcggccaccatgcccaagctgatgtcggaactgtcggacacctatctgacgaaccccgtc
aaggtcgccgtcaacccgccgggccaggccgccaagaagatcgaacagggcgtgcatttc
acgacccaaggcgacaaggcgaccctgctggccgaatacatgtccaagcatacggacgaa
ctggcgatggtcttcggccgcaccaagcatggctgcgaaaagctggccaagctgttggag
aaatggggctttgcggtcgccgcgatccacggcaacaagtcccaaggccagcgcgagcgc
gcgctggaggccttccgcaagggcgagaccaaggtgctggtcgccaccgacgtggccgcc
cgcggcctcgacatcccggaggtggcgcatgtctacaactacgacctgcccaacgtgccg
gaaaactatgtccaccgcatcggccgcaccgcgcgcgccgggcgcgagggccgcgccgtc
gccttctgcgcgcccgccgagctgggcgagctgcgcgccatcgaaaaggccatgaagacc
accatcccggtcatcggcggcaccgcgccctcggccgcgatggtcgcggcggcggggccc
gcgggcggtccgcagcgcggccgcggcaagccgatggagggcggcaacaagcgcccggcg
cgccgcccctcgcgcgcgccgaaaagccgccaggcctga
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