Paracoccus aestuarii: JHW48_12645
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Entry
JHW48_12645 CDS
T08926
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paex
Paracoccus aestuarii
Brite
KEGG Orthology (KO) [BR:
paex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paex03032
]
JHW48_12645 (topA)
03400 DNA repair and recombination proteins [BR:
paex03400
]
JHW48_12645 (topA)
Enzymes [BR:
paex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JHW48_12645 (topA)
DNA replication proteins [BR:
paex03032
]
Prokaryotic type
DNA Topoisomerases
JHW48_12645 (topA)
DNA repair and recombination proteins [BR:
paex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JHW48_12645 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WCR00776
LinkDB
All DBs
Position
2487331..2490036
Genome browser
AA seq
901 aa
AA seq
DB search
MPVVVVESPAKAKTIEKYLGGDYRVLASFGHVRDLPPKDGSVDTDNDFDMKWEVAADSKK
HLKAIKDALKDDPNLILATDPDREGEAISWHLLEALAPALKKGAQVDRVTFNAITKTAVT
EAIAKPRRIDQPLVDAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVDRE
MEIEAFKPREYWSVHARLATPGGDEYDATLTQLAGKKLDRFDLADAGQAAMAVSAVASRD
LTVSSVAAKPASRNPWPPFMTSTLQQEASRKMGMGAKACMSAAQRLYEAGLITYMRTDGI
DMAPEAVMSARDAIKARFGEEYLPKSPRMYKNKAKNAQEAHECIRPTDMMLSPDRLKVSA
DDQRKLYDLIWKRTIASQMEAARMERTTVEIASPDGQVGLRATGQVMLFDGFLRVYDQGR
DDDEGEDSARLPAITEGEAARLVPAAFDAELAKAHDKGGDPAPAPAGQRGAPGLLTDEAA
RVASRQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRDYVRKDKNRLIPEDK
GRLVTIFLLKYFPRYVSYDFTADLETELDEISAGERVWRDVLGRFWKDFSKALEGTSELR
ITEVLDAIDDALAPHLYPPRADGGDPRECPLCGAGRLNLKTARSGGAFIGCTNYPECRYT
RPLSAPDGEAPVGDRVLGEDAGDQISLKTGRFGPYVQRGEATEEVPKPPRASIPKGWDAA
NLDLSQALMLLGLPRQIGLHPEDGQPIETNIGRYGPYVKHGSKYANIADVDEVFTIGMNR
AVEVLAQKQTRGRTAAAPLRELGEHPDGGPIQVMSGRYGPYVKWAKVNATLPRDVAPEDL
TQDQALELIAAKAAKSPSKAKKAPAKKAPAKKAAAKKPAAKKPSAKKAPARKAADTDGEA
G
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgtcgtcgtcgaatccccggccaaggccaagaccatcgagaaatatctcggc
ggcgactatcgcgtgctggccagtttcggccatgtccgcgacctgccccccaaggatggc
agcgtcgataccgacaatgatttcgacatgaaatgggaggtggcggccgacagcaagaag
cacctcaaggcgatcaaggacgcgctgaaggacgatccgaacctgatcctggccaccgac
cccgatcgcgagggcgaggcgatcagctggcacctgctggaggccttggcccccgccctg
aagaagggcgcgcaggtcgaccgggtgaccttcaacgccatcaccaagaccgccgtgacc
gaggccatcgccaagccgcgccgcatcgaccagccgctggtcgatgcctatctggcgcgc
cgggcgctggattatctggtgggcttcaatctctcgccggtcctgtggcgcaagctgccg
ggcgcgaaatcggcgggccgggtgcaatcggtctgcctgcgcctgatcgtcgaccgggaa
atggagatcgaggccttcaagccccgcgaatactggtccgtccatgcccgcctggccacg
cccggcggcgacgaatatgacgcgaccctgacccagctggccggcaagaagctggaccgc
ttcgatctggccgatgccggtcaggcggcgatggccgtcagcgccgtcgccagccgcgat
ctgacggtttccagcgtcgccgccaagcccgccagccgcaatccctggccgcccttcatg
acctcgaccctgcagcaggaggccagccgcaagatgggcatgggcgccaaggcctgcatg
tcggcggcgcagcgcctctatgaggccgggctgatcacctatatgcggaccgacggcatc
gacatggcccccgaagcggtgatgtcggcccgcgacgccatcaaggcccgcttcggcgaa
gaatacctgccgaaatcgccgcgcatgtacaagaacaaggccaagaacgcgcaggaggcg
catgaatgcatccgccccaccgacatgatgctgtcgcccgacaggctgaaggtcagcgcg
gatgaccagcgcaagctctatgacctgatctggaagcgcaccatcgccagccagatggag
gccgcccggatggagcggaccacggtcgagatcgccagccccgacggccaggtgggcctg
cgtgccaccggtcaggtgatgctgttcgacggcttcctgcgcgtctatgaccaaggccgc
gacgatgacgagggcgaggacagcgcccgcctgcccgccatcaccgagggcgaggccgcg
cgcctggtccccgcagccttcgacgccgaactggccaaggcccatgacaagggcggcgat
cccgccccggcccccgcgggccagcgcggcgcacccggcctgttgaccgacgaggccgcc
cgcgtcgcctcgcgccagcatttcacccaaccgcccccccgctataccgaggccaccttg
gtcaagcgcatggaggagctggggatcggccgcccgtccacctatgccagcatcgtcacc
acgatccaggaccgcgattacgtccgcaaggacaagaaccgcctgatccccgaggacaag
ggccgactggtcacgatctttctgctgaaatacttcccgcgctatgtcagctatgacttc
accgccgatctggagacggagctggacgagatcagcgccggggaacgcgtctggcgcgat
gttctgggccggttctggaaggatttttcaaaggcgctggagggcacctccgaactgcgc
atcaccgaggttcttgacgcgatcgacgacgcgcttgcgccgcatctctatccgccgcgc
gccgacggaggcgatccgcgggaatgcccgctttgcggggcggggcggctgaacctgaag
accgcgcgttcgggcggggccttcatcggctgcacgaactatcccgaatgccgctataca
aggccgctgtcggcacccgatggcgaggcgccggtgggcgaccgcgtgctgggcgaggat
gcgggcgaccagatcagcctgaagactgggcgcttcggcccctatgtccagcgcggcgag
gcgaccgaggaggtgccgaaaccgccccgcgcctcgatccccaagggctgggacgcggcc
aatctggatctgtcgcaggcgctgatgctgctgggcctgccgcgccagatcggcctgcac
cccgaggacggccagccgatcgagaccaatatcggccgctacggcccctatgtgaagcac
gggtcgaaatacgccaacatcgccgatgtggacgaggtcttcaccatcggcatgaaccgc
gccgtcgaggtgctggcccagaagcagacccgcggccgcaccgccgccgccccgctgcgc
gagctgggcgagcatcccgatggtggcccgatccaggtcatgagcggccgctatggcccc
tatgtcaaatgggccaaggtcaatgccaccctgccccgcgacgtggcgcccgaggatctg
acccaggaccaggcgctggagctgatcgccgccaaggccgccaaatcgccctccaaggcc
aagaaggcccccgcgaagaaggccccggccaagaaggcggccgccaagaaaccggcggcg
aaaaagccctccgccaagaaggccccggccaggaaggccgctgatacggatggggaggcc
ggttga
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