Paeniglutamicibacter sp. Y32M11: KUF55_11405
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Entry
KUF55_11405 CDS
T07362
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
paey
Paeniglutamicibacter sp. Y32M11
Brite
KEGG Orthology (KO) [BR:
paey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paey03019
]
KUF55_11405 (hrpA)
Enzymes [BR:
paey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KUF55_11405 (hrpA)
Messenger RNA biogenesis [BR:
paey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KUF55_11405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
WHD_HA2
nSTAND3
T2SSE
SLFN-g3_helicase
PhoH
FtsK_SpoIIIE
nSTAND_NTPase5
DUF7217
ABC_tran
ResIII
AAA_30
Zeta_toxin
NACHT
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
QXQ09115
LinkDB
All DBs
Position
2595635..2599639
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AA seq
1334 aa
AA seq
DB search
MALTISYPEALPVSARRDDIMSAIKDNQVVIVAGETGSGKTTQLPKMLLELGMGKRGMIG
HTQPRRLAARTVAERIAEELGTTIGAEVGFHVRFTGEVSRATQVKVMTDGILLAEIQRDK
LLKKYNAIIIDEAHERSLNIDFLLGYLRRILPKRPDLKIVITSATIDPQRFAQHFAAESP
QGEEPIPAPIIEVSGRTFPVEVRYRPLNPADGMDEDELDPDSAVEDRDPLDAIAEAVDEL
ATEAPGDILIFFPGEREIRDAAEVLRARVQTNRRLAGTEILPLFARLSLAEQHQVFNPGK
NRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRC
GRVSDGIAIRLYSEEDFTSRPAFTDPEILRTNLAAVILQMSSMGVVRTARDVADFPFVQP
PDAKSVNDGIALLRELGALNTGTDASITKIGSQLAQLPVDVRLGRMIVESSTRGCAKEVM
VLAAALSIQDPRERPSEETGKRERAAEMHKRFVDAKSDFSSLLNLWRYLQEQQKELSSSA
FRRLCKNEYINYLRVREWQDLFTQLRQLAKPLGITISPEPVDPATNEDAIHISLLAGLLG
HVGSWDERKREYVGARGTRFSVFPGSALFKKSTEWVMAAELVETSRLWARTVARLDPKWV
EEIAGDLLKRNYSEPHWSRNAGAVMGYEKVTLFGLPIVPRRRIQYSRVDPELCRELFIRN
ALVEGDWKTHHKFFARNRRVLEDIEELETRMRRRDLRVSDDDLFEFYDARLGANVLSERH
FDRWWKAARHEDPTLLDFNPEDMLQADATELDEAAYPRTWRHGTLDLDLVYEYNPAARAG
ESDGVSVRVPVLFLNQLDPVRFRWLIPGLRVELVTALIKSLPKAIRKNFVPAPDVARTAV
AALEADFNPETDDLAASLELVLRRLKGVVIEPGSWNWEALPAHLRFTFTILDAESKVLDE
SQELAVLQQSLAAANRSALARSLGIKPGAALPGAPGAANGARGAKAGSGSTVPRGGSLPA
STSGARRGSAGSAVATTVWERTGLSDWDASVGNNGVITPKVVTQVAGQQVTAYPALLDDK
TSVRLTVFRNPVEQLAAHRTGVIRLLLLKVPSPARYVLDHLNNLEKLVFTQNPHGSVDEL
IRDCTMAAVDKLVPETLPFTQAEFEALYEQVRAELIDTVFSVTAIVEKVLSGARRINKEI
KSVSSMALINALNDVKSQLGQLVYPGFVANTGYAQLAQLPRYISAIEKRLEKLAGGAVNR
DNVAMTDIQSLEDDYDAALSQLVPGTRTPAPLAAVKWMLEEYRVSLFAQELGTAYSVSAK
RIRVAMREGLAAAS
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggccctgacgatttcgtatcccgaagcccttcccgtatccgcgcgacgtgatgacatc
atgtccgccattaaggacaaccaggtggtcatcgtcgccggtgaaaccggttccggaaag
accacgcagctgcccaagatgctcctcgagttgggcatgggcaaacgcggcatgatcggg
cacacccagccccgccggctggcagcacgtaccgtcgccgagcgcatcgccgaagaactc
ggcaccaccatcggcgccgaggtgggcttccacgtgcgtttcaccggcgaagtctcccgc
gccacccaggtcaaggtgatgaccgatggcatcctgctggccgagattcagcgcgacaag
ctgctgaagaagtacaacgcgatcatcatcgatgaggcccacgaacgcagcctgaacatc
gacttcctgctgggctacctgcgccgcatcctgcccaagcgcccggatctgaaaattgtc
atcacctccgccaccatcgacccgcagcgctttgcacaacacttcgccgccgaaagtcca
cagggcgaagaaccgatcccggcaccgatcatcgaggtctccggacgtaccttccccgtg
gaggtgcgctatcgcccgctgaatcccgccgatggcatggacgaggatgaattggatccg
gactcggcggtggaggatcgggacccactggatgcgatcgccgaggccgtggacgaactt
gccaccgaggctccgggtgacattctgatcttcttccccggcgagcgcgagattcgtgat
gccgccgaggtcttacgtgcccgggtacagaccaaccggcgtttggccggcaccgagatt
ctgccgctttttgcgcggctttccctggccgagcaacaccaggtctttaatccggggaaa
aaccgacggatcgtgttggccaccaacgttgcggaaacttcgctgacggtgccgggcatc
aagtacgtcatcgacaccggcaccgcccgcatctcccgctattcgcaccgcaccaaggtg
cagcgcctgcccattgaacgggtttcccaggccagcgccaaccagcgttcggggcgttgt
ggccgcgtatccgacggcatcgccatccgtctgtattccgaggaggacttcacctcccgt
ccggcgttcaccgacccggagattctgcgcaccaatcttgccgcggtgatcttgcagatg
agttcgatgggcgtggtgcgcaccgcacgcgacgtcgccgacttcccctttgtccagccc
cccgatgccaagtccgttaacgatggcatcgcgctgctgcgcgaactcggtgccctgaac
accggaaccgatgcgtccatcaccaaaattggttcacagctggcccagttgccggttgat
gttcgcctgggtcgcatgattgttgagtcaagcacccgtggctgcgccaaggaagtcatg
gtgctcgccgctgccctctccattcaggacccacgggagcggccgagtgaggaaacgggc
aagcgtgaacgcgcggcagaaatgcacaagcgttttgtggatgcgaagtcggacttctcc
tcactgctgaacctctggcgttatctgcaggagcagcagaaggagctctcttcctccgcc
ttccgtcgactgtgcaaaaacgaatacatcaactacctgcgcgtgcgtgaatggcaggat
ctgtttacgcagctgcggcagctggccaaaccgctgggcatcaccatctctcccgagccc
gtggacccggcgaccaacgaggatgccatccacatttccctgctggccggcctgttgggg
catgtgggttcctgggatgagcgcaagcgcgaatatgtgggggcccgcggtactcgcttc
tccgtcttccccggttccgcactgttcaaaaaatccaccgagtgggtcatggccgccgag
ctggtggaaaccagtcggctctgggcgcgcaccgtggcacggctggatcccaaatgggtg
gaggagatcgccggagatctgctcaagcgcaactactccgaaccccattggtcacgcaat
gccggtgcggtcatgggatacgagaaggtcacgctcttcgggctgccgatcgtcccgcgc
cgccgcatccagtattcgcgggttgaccccgagctctgccgtgaactgttcatccgcaat
gcgctggtggagggtgattggaagacgcaccataagttctttgcccgcaaccgccgggtg
ctcgaagacattgaggaactcgagacccgcatgcgtcggcgcgatctgcgggtcagcgac
gatgacctcttcgagttttacgatgcgcgcctgggcgccaatgtcctctccgagcggcac
tttgaccgctggtggaaggcagctcggcatgaggatcccacgctgctggacttcaacccg
gaggacatgctccaggcggacgccacggaacttgatgaggcagcctacccacgtacctgg
cgtcacggcacgctggatcttgatctggtctacgaatacaaccccgccgcccgcgccgga
gaatccgatggcgtctcggtacgggtcccggtgctcttcttaaaccagctggaccccgtg
cgtttccgttggctcatcccggggctacgcgtggagctggtcaccgcgctgatcaagtca
ctgcccaaggccatccggaaaaactttgtacccgctcccgatgtggctcgcaccgcggtg
gccgcgctcgaagcggactttaatccggagaccgacgatctggcggcctcgctggaactg
gtgctccgccggctcaagggtgtggtcatcgaacccggttcgtggaattgggaggcgctg
ccggcccacctgcgtttcaccttcaccatccttgatgccgagtcgaaggtgcttgacgag
tcgcaggaactagccgtgctgcagcagtccctggccgcggctaaccgctccgccctggcc
cggtcgttgggcatcaagcccggtgccgcgctccccggtgccccgggagctgccaacggg
gcgcggggcgccaaggcgggttccggttccacggtgcctcggggtggctcgctgcccgct
tccacctccggtgctcggcgtggatccgcgggttcggccgtggccaccaccgtgtgggaa
cgtaccggtttgagcgactgggacgcgtcggtgggcaacaacggggtcatcacccccaag
gtggtcactcaggtcgcaggtcagcaggtcaccgcctacccggcgttgcttgatgacaaa
acctcggtacgcctgaccgtcttccgcaatccggtggagcagctcgccgcccaccgcacc
ggcgtgatccgattgctgctgctgaaggtaccctcccccgcacgctacgtccttgatcac
ctgaacaatctggaaaagctggtctttacccagaacccgcacggcagcgtggacgaattg
atccgcgactgcaccatggcggcggtggacaagttggtccccgagaccctgcccttcacc
caggcggagtttgaggccttgtacgagcaggtccgtgccgaactcatcgacaccgtcttc
agcgtcacggccatcgtcgagaaggtgctctccggtgcccgccggatcaacaaggagatc
aagtcggtctcctcgatggcgctgattaatgccctgaacgacgtgaagtcgcagctcggg
cagctcgtgtaccccggctttgtggccaacaccggttatgcgcagctggcgcagttgccc
cggtacatctccgccatcgaaaagcggctggaaaaattggccggcggcgcggtgaatcgt
gacaacgtggccatgaccgacatccagtccctcgaggatgactacgatgccgccctgtct
caactggtgcccggcacgcgcaccccggcgcccttggctgcggtgaagtggatgctggag
gaataccgggtctcactcttcgctcaggaactggggaccgcgtactcggtgtcggccaaa
cggatccgcgttgccatgcgtgaggggctggccgccgcgtcctag
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