Paracoccus aerodenitrificans: PAE61_11010
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Entry
PAE61_11010 CDS
T09265
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paez
Paracoccus aerodenitrificans
Brite
KEGG Orthology (KO) [BR:
paez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paez03019
]
PAE61_11010 (hrpB)
Enzymes [BR:
paez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAE61_11010 (hrpB)
Messenger RNA biogenesis [BR:
paez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAE61_11010 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WBU62897
LinkDB
All DBs
Position
1962854..1965256
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AA seq
800 aa
AA seq
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MSDRLPIDDALPALRKAMKEHGRAVLIAPPGAGKTTRVPLALMDQIAGRIVMLEPRRLAA
RAAAERLAQGLGQNLGQDVGFRIRGEAVPGKRIEVVTEGILTRMLQSDPSLDGIGCVIFD
EFHERSLNADLGLALTWESRGALRDDLGILVMSATLDAGPVASMLDDAPVVESLGRAYPV
ETRYLPRPLPGQFRFDLEAARLIAEAEARTRDDPGGTILAFLPGEGEIRRVAASLSDLPV
EIAPLYGAMDFKAQRAALAPPGETRRIVLATTIAETSLTIPGVRVVVDCGRARRARFDPG
SGMSRLVTEKVSRAEAEQRRGRAGRVSEGICYRMWARAEEGALPAYAPPEIAVADLTGLA
LELANWGSDGSDLAFLTPPPEATMAEARGLLRDLGALDEDNRITPHGRDLAALPVHPRIA
HMLAVAGRQAADLAALIEDRDPLRGTGADLALRLRAMRDPARHGPARGGLERLKQEAQRL
RRMTAEHPPMPPGAMAALAYPDRIGMRRPGDQPRYLLSGGRGAVLPEGDPLAGERLIVVT
DLDGEGRESRIRLALPVSEDDLRDLFADQIRLVEAVEWEPRQGRILARLREKLGALTLAD
KPLDSPDPEALARAAWQGVQAEGLFWTSKAARLRARIRLLPEGPDVSDEALLANGDWLIP
FLGKVRNRGDIRSLDLTQPLINLLGWEGQQALNRLAPAHFTTPLGRQVPIDYDAETPSIE
LRLQELFGVTAHPMTGHQRLRITMLSPGQKPIAVTTDLPGFWAGSYAEVRKEMRGRYPKH
PWPEDPTEADPTLRAKRRGE
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccgcctgccgatcgacgacgccctgcccgctttgcgcaaagccatgaaggaa
catggccgcgccgtgctgatcgcgccgccgggggcgggcaagacgacgcgggtgcctctg
gcactaatggatcagattgcgggccgcatcgtgatgctggagccgcgccgccttgccgcc
cgcgccgcagccgagcggctggcgcagggtctgggacagaaccttgggcaggatgtaggc
ttccgcatccgcggagaggcagtgcccggcaagcgcatcgaagtcgtgactgaggggatt
ttgacccggatgctgcaatccgacccctcgctggacgggatcggttgcgtgatcttcgac
gaattccatgaacgcagcctgaatgccgatctggggctggcgctgacatgggaatcgcgc
ggggctctccgcgacgatctgggcattctggtcatgtccgcgacgctggatgccgggccg
gtcgcttccatgctggatgatgcgccggtggtggaaagccttggccgtgcctatccggtc
gagacccgctatctgccgcgccccctgcccgggcagttccgcttcgatcttgaggccgcc
aggctgatcgccgaagccgaggcccggacccgcgacgatcccggcggcacgatccttgcc
ttcctgcccggagagggcgaaatccggcgcgttgccgccagcctctcggatctgccggtc
gagattgcgccgctttacggggcgatggatttcaaggcgcaacgcgcggcacttgcgccc
cccggcgagacacggcgcatcgtgctggcgacaacgattgcggaaacctcgctgaccatt
ccgggcgttcgtgtcgtggtcgattgcgggcgggcgcggcgggcgcggttcgaccccggc
tcgggcatgtcgcggctggtgacggaaaaggtctctcgcgccgaggcggaacagcggcgg
ggccgcgcaggtcgggtctcggaagggatttgctaccggatgtgggcgcgggccgaggaa
ggcgccttgcccgcatatgctccgccggaaatcgccgtggccgatctgaccgggttggcg
ctggaattggcgaattggggcagcgacggcagcgatctggcctttctgaccccgccgcca
gaggccacgatggccgaagcgcggggattgctgcgcgatctgggcgcgcttgacgaagat
aaccgcatcaccccgcatggccgcgatctggccgcgctgccggtgcatccacgcattgcg
catatgctggcagtcgcgggacggcaggccgccgatctggccgcgctgatcgaggatcgc
gacccgctgcgcggcacgggcgcggatctggcattgcggctgcgggcgatgcgcgacccg
gcacggcatggcccggcgcggggtggtttggaacggctgaagcaagaggcgcagcgcctg
cgccgcatgaccgctgagcacccgccgatgccccccggcgcgatggccgcgcttgcctat
cccgaccggatcggcatgcgccgccccggcgatcagccgcgctatctgctgtcgggcgga
cgcggcgcggtgctgcccgagggcgatcctctggcgggtgaaaggctgatcgtggtgacc
gatctggacggagaggggcgggaatcgcgcataaggctggccctgccggtcagcgaagac
gatctgcgcgacctctttgcggaccagatacgccttgtcgaagcggtcgaatgggaaccg
cgtcagggccgcattctggcccggctgcgcgaaaaactgggggcgctgacactggcggat
aaaccgctggactcgcccgatcccgaggcattggcccgcgccgcatggcagggcgtgcag
gccgaggggctgttctggacgtcgaaagccgcccgtctgcgtgcccggatcaggcttctg
cccgaggggccggatgtctcggatgaggcattgcttgcgaatggcgactggctgatcccg
tttctgggcaaggtccgaaaccggggcgatatccgctcgctcgatctgacgcagccgctg
ataaacctgcttggatgggaggggcagcaggcgctgaaccggcttgcgcccgcgcatttc
accacccctctgggccgtcaggtgccgattgattacgacgccgaaaccccgtcaatcgaa
ttgcgcctgcaagagctgttcggggtcaccgcgcatcccatgacgggccaccagaggctg
cgcatcaccatgctttcgccggggcagaaaccgattgcggtgaccaccgatctgccgggt
ttctgggcgggcagctatgccgaggtgcgcaaggagatgcggggccgctatccgaaacat
ccctggcccgaggacccgacagaggccgatccgacgctgcgggccaagcggcggggcgaa
tag
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