Pseudomonas aeruginosa M18: PAM18_0990
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Entry
PAM18_0990 CDS
T01973
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paf
Pseudomonas aeruginosa M18
Pathway
paf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAM18_0990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paf03019
]
PAM18_0990
Enzymes [BR:
paf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAM18_0990
Messenger RNA biogenesis [BR:
paf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAM18_0990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DNA_ligase_aden
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEO73477
LinkDB
All DBs
Position
1075851..1077200
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AA seq
449 aa
AA seq
DB search
MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL
QRLTLEGPQVAANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMK
LRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKR
QTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQ
ANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVA
TDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIE
TLIGQTLQRREEPDFEPEHRVPQTAPGGVVLKKPKKPKKPKAAESVGKPGKIHLGSWFDS
SAPTVKAVRKAPGFGAGAAGKPKKRPSGK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgcttccctcggtctgctcgaccccctgctcaaggccctcgaagggctcggc
cacggcacgcctacgccgatccaggcccaggccatacctccggcgctcaagggccgcgac
ctgctcgccgcagcacagactggcaccggcaagaccgccggtttcgccctgccgttgctg
caacggctgaccctggaggggccgcaggtcgctgccaactcggtgcgcgcactggtcctg
gttccgacccgcgaactggccgagcaggtccatgccagtattcgcgactacggccagcac
ctgccgctgcgtaccgcggtggcctacggtggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggagtggatatcctcgtcgccactcctgggcggctgctcgacctgtatcgg
cagaacgcggtgaagttcgcccagctccaggcgttggtgctggacgaagccgatcgcatg
ctcgacctcggtttcgcccgcgagctggacgaactgttcgccgcgctgccgcgcaagcgc
cagaccctgctgttttccgcgaccttctccgacgccatccgcacgctggcccgtgaactg
ctgcgcgacccgctgtccatcgaggtcagtccgcgcaataccgcggcgaagagcgtcagg
caatggctggtgccggtggacaagaagcgcaaggtcgagctgttctgccacctgttgcag
gccaatcgctggcgccaggcgctggtcttcgccaagacccgcaagagcgtcgaggaactg
gtcggactgttgcagcggcagggtatcgccgccgactcgatccatggcgacaagccgcag
ccggcgcggctgcgcgccttgcagcggttcaaggccggcgaggtagacctgctggtagcc
accgacgtggccgcgcgtggcctggatatcgaggaaatgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggactacgtgcatcgcatcggccgtaccggacgtgccggtgcc
tccggccaggcggtgtcgctggtctgcgccgacgaagtggagctgctggcggcgatcgag
acactgatcgggcagaccctgcaacgccgcgaggagcccgacttcgagccggagcaccgg
gtgccgcagaccgcaccgggcggcgtggtgctgaagaaaccgaagaagccgaagaaaccc
aaggccgcggagagcgtcggcaagcccggcaagatccacttgggcagttggttcgacagc
agcgcgccgacggtcaaggcggtgcgcaaggcaccgggcttcggcgcgggtgcggcgggc
aagccgaagaagcggccgtccggcaaatag
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