Pseudomonas aeruginosa M18: PAM18_1985
Help
Entry
PAM18_1985 CDS
T01973
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paf
Pseudomonas aeruginosa M18
Pathway
paf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAM18_1985 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paf03019
]
PAM18_1985 (rne)
03009 Ribosome biogenesis [BR:
paf03009
]
PAM18_1985 (rne)
Enzymes [BR:
paf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAM18_1985 (rne)
Messenger RNA biogenesis [BR:
paf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAM18_1985 (rne)
Ribosome biogenesis [BR:
paf03009
]
Prokaryotic type
rRNA processing factors
PAM18_1985 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AEO74471
LinkDB
All DBs
Position
complement(2182098..2185262)
Genome browser
AA seq
1054 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIR
QVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREA
LEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVE
PAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRD
GRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREE
RAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPR
EDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELE
GSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDAPTSE
AVETQGADSEANAGETADIEAPVTVSVVRDEADQSTLLVAQATEEAPFASESVESREDAE
SAVQPATEAAEEVAAPVPVEAAAPSEPATTEEPTPAIAAVPANATGRALNDPREKRRLQR
EAERLAREAAAAAEAAAQAAPAVEEVPAVASEEASAQEEPAVPQAEEIAQADVPSQADEA
QEAVQAEPEASGEDATDTEHAKKTEESETSRPHA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgactcaacccgaggagttgcgtgttgcactggtcgacggccaacgc
ctgttcgacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaacatctacaaa
ggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttcggcgccgaa
cgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaatcccccgaa
ggccggatcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgt
tacctggtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgtatcgaaggc
gaagagcgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggccgacatgggc
ctgatcgtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgggacctcgac
tacctgctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggcgcgcccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgatagcatcgacgcccaggaagaagccctgaacttcatccgc
caggtgatgccgcagtacgccagcaaggtgaagctgtaccaggacagcgttccgctgttc
aatcgcttccagatcgagagccagatcgagaccgccttccagcgtgaagtgaagctgccg
tccggcggctccatcgtcatcgacccgaccgaggccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgctcgccagctgcgcctgcgtgacatcggtggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtccgcgaagcc
ctcgaggccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgc
tgcaacggccagggcatcatccgcgatgtcgagtcgctgtcgctggccatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtgcccttccag
gtcgccgccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaactgcgtacc
cgcgcgcgcatcttcatcctgccggacgatcatctggaaaccccgcatttcgaagtccag
cgtctgcgcgatgacagccccgaactggttgccggccagaccagctacgaaatggccacc
gtcgagcacgaagaagcccagccggtcagctcgacccgcaccctggtccgccaggaagca
gcagtcaagaccgtcgctccccagcagcccgcaccgcaacacaccgaagcaccggtcgag
ccggccaagccgatgcccgagccgagcctgttccagggcctggtgaagtccctggtcggc
ctgttcgcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaagccggctgcc
gagcgccaaacccgccaggacgagcgtcgcaacggccgccagcagaaccgccgccgcgat
ggccgcgatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgcgcagagcgc
caaccgcgcgaagagcgcgccgaacgcccgaaccgcgaagagcgcagcgaacgtcgccgc
gaagagcgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggccgtgaagag
cgcgccgagcggacaccccgcgaagagcgccagccgcgcgaaggccgcgaaggtcgcgag
gaacgcagcgaacgccgccgcgaagagcgcgccgaacgcccggcccgcgaagagcgacaa
ccccgcgaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgccagccgcgc
gaggatcgccaggctcgcgacgccgcggccctggaagccgaggcactgccgaacgacgag
agcctggagcaggacgagcaggacgataccgatggcgagcgcccgcgccgccgctcccgc
ggccagcgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggtgagctggaa
ggcagcgaggcgaccgataacgccgccgcgccgctgaacaccgtcgcagccgccgctgct
gccggtatcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagccccggccact
accagcgaggctgccagcgaaaccacggcaagcgatgaaaccgacgcgccgaccagcgaa
gccgtcgaaacccagggcgcggacagcgaggccaatgccggcgaaaccgccgacatcgaa
gcgccggtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctgctggtcgcg
caagccactgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaagacgccgag
agcgccgtgcaaccggcaacggaagcggccgaagaagttgccgccccggtgcccgtcgaa
gcagcagcccctagcgagcccgcaaccaccgaagagccgaccccggccatcgcggcggtg
ccggccaacgcgaccggccgtgccctcaacgacccacgggaaaaacgtcgcctgcaacgc
gaagccgagcgtctggcacgcgaagccgcagcagcagccgaagcggcagctcaggccgct
cccgccgtcgaggaggtcccggctgtagcgagcgaggaagcgtcggcccaggaggaacct
gctgtaccccaggctgaagaaatcgcccaggccgacgttccgtcccaggcggacgaagcc
caggaagcggtacaggccgagcctgaagcttccggcgaagacgccaccgacacggagcac
gcgaaaaagaccgaggaaagcgaaacctcgcgcccgcatgcctga
DBGET
integrated database retrieval system
