Pseudomonas aeruginosa M18: PAM18_2102
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Entry
PAM18_2102 CDS
T01973
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
paf
Pseudomonas aeruginosa M18
Brite
KEGG Orthology (KO) [BR:
paf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paf03016
]
PAM18_2102 (ligT)
Enzymes [BR:
paf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
PAM18_2102 (ligT)
Transfer RNA biogenesis [BR:
paf03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
PAM18_2102 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AEO74586
LinkDB
All DBs
Position
complement(2304017..2304565)
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AA seq
182 aa
AA seq
DB search
MPDRSLRLFFALPCPPPLAERIGRWRDGRPLPGRQVATANLHLTLAFLGQVPSARLEALL
DMAAAIEAAPFDLCLDRLLRWRNGILLLAPSQPPGALLRLRRALRSGLAELELPVETRPF
SAHLTLARDVAPLEDAPLPPTFVWQVDHFSLFCSQNDAAGVRYRTLGRWALCGEDSNERF
AP
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcgctctcttcgcctgttcttcgccctgccctgcccacctcccctcgccgag
cggatcggccggtggcgcgatggccggccactgcccggacgccaggtggcgacggcgaac
ctgcacctgaccctggccttcctcgggcaggtcccgtccgctcggctcgaggccctgctg
gacatggccgcggccatcgaagccgcgcccttcgacctgtgtctcgaccgtctgctgcgc
tggaggaacggcatcctgctgctggcccccagccaaccgcccggcgccctcctgcgcctg
cgccgcgccctgcgctccggccttgccgaactggagctgcctgtggaaacccgcccattc
agcgcccatctgaccctggctcgcgatgtcgcgccgttggaggacgccccgctaccccca
accttcgtatggcaggtcgaccatttcagcctgttttgctcgcaaaacgacgccgcgggc
gtgcgctaccgcacactcggtcgctgggcgttgtgcggggaagattcaaacgagcgtttc
gcgccgtaa
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