Pseudomonas aeruginosa M18: PAM18_2123
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Entry
PAM18_2123 CDS
T01973
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paf
Pseudomonas aeruginosa M18
Pathway
paf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAM18_2123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paf03019
]
PAM18_2123
03009 Ribosome biogenesis [BR:
paf03009
]
PAM18_2123
Enzymes [BR:
paf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAM18_2123
Messenger RNA biogenesis [BR:
paf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAM18_2123
Ribosome biogenesis [BR:
paf03009
]
Prokaryotic type
rRNA helicases
PAM18_2123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEO74607
LinkDB
All DBs
Position
2322548..2324218
Genome browser
AA seq
556 aa
AA seq
DB search
MTQETVGFAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAF
ALPLLSRIDPSRREPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLK
ALRQGAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPES
RQTVLFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLL
EVEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVI
ATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETL
AAALLARLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRA
RCRTALGARDGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKD
TRVAGKALRLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggaaaccgtcggcttcgccgcgctcggtattcaccccaatgtgctcgcggca
atcgtcgccgtaggctacgaagagccttcgcctatccaggctcaatcgattccgctgatc
ctcgaaggccacgacatgatcggccaggcgcagaccggtaccggcaagaccgccgcgttc
gccctgccgctgctgtcgcgcatcgacccgagccgccgcgagccgcagatgctggtgctg
gtgccgacccgcgagctggccctgcaggtcgccaccgcctgcgaaacctattccaagcaa
ttgccgggcgtcggcgtggtcgccgtctacggcggcgcgcccatggggccgcagctgaag
gccctgcgccagggcgcacagatcctcgtcgctacccccggccgcctgtgcgaccacctg
cgccgcgacgagaagctgctggccaccgtccagcgcctggtgctcgacgaagccgacgag
atgctcaagctcggcttcatggacgacctggaagtgatcttcgaggcgcttcccgaatcg
cgccagaccgtgctcttctcggcgaccctgccggcgtccatccgtggcatcgccgagcgc
cacctgaagcagcccaagcacgtcaagatcgccgccaagacccagaccgtggcgcgcatc
gagcaggtccacctgatggtccatgccgaccagaaggccggttcgatccagcgtctgctg
gaagtcgagcagttcgacgcgctgatcgccttcgtccgcaccaagcaggccaccctcgac
tacgccgaattgctcgagcgccagggctaccgcgccgccgcgctcaacggcgacatgccg
caggcccagcgcgagcgggtcatcgagtcgctgaaggacggttcgctggacatcgtcatc
gccaccgacgttgccgcccggggcctggacgtaccgcgcatcacccacgtgctgaacatc
gacatgccgtacgaccccgagtcctacgtgcaccgcatcggccgtaccggccgtgccggc
cgggaagggcgcgcgctgttgctggtgactccgcgcgagcggcgcatgctgcaggtgatc
gagcgggtcaccgggcagaaggtcggcgaagtccgcctgccggatgccgagaccgtgctg
gaggcccgcctggcgcgcctggccgcgagcctgacgcccttgctcgacagcgccgtcgag
cagcgcggcgcggtgcgcgacgagctgtgccgtcgcctcggctgcgatgccgagaccctg
gccgccgcattgctggcacgcctgaccgccggcaaggcgctggacctggagtcggtgcgc
cgcgaacagccgctgaccccatcggcaccgcgcgagcgtgccgaccgtggcgaacgcggc
gagcgtccggagcgcagcggcgagcgtcgtccgatggcgccgccgagcgaaggccgtgcc
cgctgccgcactgccctcggcgcgcgcgacggggttgcggcgaagaacctgctgggcgcg
atcctcaacgagggcggcctgtcccgcgaggacatcggtcgcatccagattcgcgatacc
ttcagcctgatcgagctgcccgaggccaatctcgagcgcctgctgaccaagctcaaggac
acccgcgtcgccggcaaggccctgcgcctgcgccgctatcgcgaggactga
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