Pseudomonas aeruginosa M18: PAM18_4553
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Entry
PAM18_4553 CDS
T01973
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
paf
Pseudomonas aeruginosa M18
Pathway
paf02020
Two-component system
paf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PAM18_4553 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PAM18_4553 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paf03021
]
PAM18_4553 (rpoN)
Transcription machinery [BR:
paf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PAM18_4553 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AEO77034
LinkDB
All DBs
Position
5032526..5033995
Genome browser
AA seq
489 aa
AA seq
DB search
MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQ
AASAPQESPLQESATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWD
FTARTSSGESLHSHLLWQVNLAPMSDTDRMIAVTIIDSINNDGYLEESLEEILAAIDPEL
DVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLVSDYLDLLG
GRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVE
LNQEAMPRLRVNATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIV
EHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIFELKYFFSSHVS
TAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIA
PSSERKRLV
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcagctgacgatgacgccgcagctgcaacaggccatacgcctcctccagcta
tccaccctggacctccagcaggaaatccaggaagcgctggaatccaatcccatgctcgaa
cgccaggaagacggcgacgatttcgacaacagcgaccctctcgccgatggcgccgaacag
gcggccagcgcgccccaggagagccccctccaggaaagcgccacgcccagcgtcgaaagc
ctcgacgacgaccagtggagcgaacgcatacccagcgagttgccggtggataccgcctgg
gaagacatctaccagaccagcgccagcagcctgcccagcaacgacgatgacgagtgggac
ttcaccgcgcgcaccagcagcggcgagagcctgcacagccacctgctctggcaggtcaac
ctggcaccgatgtcggacaccgatcggatgatcgcggtgaccatcatcgatagcatcaac
aacgatggctacctcgaagagtccctcgaagaaatcctcgccgccatcgatccggaactg
gacgtcgagctcgacgaagtggaagtcgtgctgcgccgcatccagcaactggaacccgcc
ggcatcggcgcccgcaacctgcgcgagtgcctgctgctgcaactgcgccagttgccgtcc
accacgccctggctgaacgaagcgctgcgcctggtatccgactacctcgacctgctcggc
ggccgcgactacagccaattgatgcggcgcatgaagctcaaggaagacgaactgcgccag
gtcatcgagctgatccagtgcctgcatccccggcccggttcgcagatcgaatcgagcgaa
gccgaatacatcgtccccgacgtcatcgtgcgcaaggacaacgagcgctggctggtcgag
ctgaaccaggaggcgatgccacgcctgcgcgtcaacgccacctacgccggcatggtccgc
cgcgccgacagcagcgccgacaataccttcatgcgcaaccagttgcaggaagcccgctgg
ttcatcaagagcctgcagagccgcaacgaaacgctgatgaaggtcgccacccagatcgtc
gagcaccagcgcggtttcctcgactacggcgaagaagccatgaagccgctggtcctgcac
gacatcgccgaagcggtgggcatgcacgaatcgaccatttcgcgggtcaccacgcagaaa
tacatgcatacgccgcgcggcattttcgagctgaaatatttcttttcaagtcacgtcagt
accgccgaaggcggggaatgctcgtccaccgcgatccgcgcgatcatcaagaaactggtg
gccgcggaaaatgcgaaaaagccattgagcgacagcaagatcgctggtttactggaggca
cagggcattcaagtggctcgccgcaccgtcgccaaataccgcgaatccctgggcatagcc
ccttcgagcgagcgcaagcgactggtgtga
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