Pseudoalteromonas agarivorans: PAGA_a0146
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Entry
PAGA_a0146 CDS
T06137
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGA_a0146 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paga03019
]
PAGA_a0146 (rhlB)
Enzymes [BR:
paga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAGA_a0146 (rhlB)
Messenger RNA biogenesis [BR:
paga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGA_a0146 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATC80753
LinkDB
All DBs
Position
I:136426..137688
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AA seq
420 aa
AA seq
DB search
MTDKKFSDFAIAPEVVAGLTESGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLT
ATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR
AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPD
TADRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLL
TLIEEEWPDKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFTKGELD
FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNL
HEIEEYIEHSIPLSHYDKTALLDDLTKPTIQRKRNYSTGPRNRSNNNGRRPNNSYQKGRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgataaaaagttttcagactttgctatcgcaccggaagtggttgccggtttaacc
gaaagtgggtttgaatattgcacacccattcaagcaaaatgcctaccttttatttgtgac
ggacgcgatatcgcgggccaagcacaaacaggtacgggcaaaacgttggcgtttttaact
gccacgtgccatcggttattacaatctagcaaagcacctagtaaacatccaagagccctg
atcatggccccgactcgggagcttgcgattcagatacacaaagatgctaaaattttagcg
ccgcactgtaatcttaacttaggtttagtatatggtggcgaagattacgaaaaacaacgt
gcacaattagaaaaaggcgttgatattttaattggtactacaggtcgactaatcgatttg
tacaagcaaggctgttacacccttaatgaaattgaggtagttgtgcttgatgaagccgat
cgtatgttcgatttaggctttataaaagacattcgttacatgttccgccgcatgccagat
acagcagatagattaaacctattattttctgccacgctttcttatcgcgtgcaagaactt
gcctttgaacatatgaccaaccctgagcacgttcaaatcgagccagacgttaaaacaggt
aagcgaattaaagaagagctatttcatccttctcaagaagataaaattaagctgctatta
actttaattgaggaagaatggccagacaaagccattgtgtttgccaatacaaagcacagc
tgtgaaacagtgtatgcctggttaaaagccgatggccaccgagtaggtatgctcactggc
gatgtaaaccagaaaaaacgccaatctatattagcgcaattcaccaaaggcgaattagac
tttttagtggcaaccgatgtggcagcacgtgggctacatatccctgaggtaagtcatgta
tttaactttgacctgccagatgattgtgaagattacgttcaccgtataggccgtacaggt
cgtgcgggcgcatcaggtcatgcaattagctttgcatgtgagcagtacgcttataacctg
catgaaatagaagagtatatagagcacagcattcctttatcacattatgataaaaccgca
ttgctagatgatttaacaaagcctactattcaaagaaagcgcaactattctacaggccca
cgtaatcgtagtaataataacggacgtcgcccaaataatagttaccaaaaaggacggtcg
taa
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