Pseudoalteromonas agarivorans: PAGA_a0298
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Entry
PAGA_a0298 CDS
T06137
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAGA_a0298 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paga03021
]
PAGA_a0298 (rpoC)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a0298 (rpoC)
Enzymes [BR:
paga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAGA_a0298 (rpoC)
Transcription machinery [BR:
paga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAGA_a0298 (rpoC)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAGA_a0298 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATC80882
LinkDB
All DBs
Position
I:294252..298424
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHCLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGIVFKDPKEAEKAYRSG
NAELHARVKVRISQSITNEAGVVEDTVTLIDTTVGRAILSLILPKGMPFESINQALGKKQ
ISGLLNECYRRLGLKDTVVFADQVMYTGFHYAMKSGVSIGIDDLVIPPVKASIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEEEQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEPVVIPNTDTVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCAKCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTDGTLKL
HNAKYVLNTDGKIVITSRSTEITIIDSFGREKERYKVPYGAVLTVQDNAEVQGNDIVATW
DPHSHPIVLEHKSKISFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNAKEPKLIIESEER
GLQETRLPSFTTIEVTDGVTANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTISFGKETKGKKRLVITPAEGDHYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTILDGGDTEFL
AGEQIEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRMARRKQGEVVEEQTVSAEEATQALTD
ALNADLSGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgatggcttattctgtgcccgt
attttcggcccagtgaaagattatgagtgtttatgtggtaaatataaacgccttaaacac
cgtggtgtgatctgtgagaagtgtggcgttgaagttacacttacaaaagtgcgtcgtgat
cgtatgggtcatatcgaccttgcgagcccagtagcacatatatggtttttaaaatcatta
ccgtctcgtattggcttaatgcttgatatgacacttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgagcctggtatgacaacgcttgagcgtggtcaactatta
ggtgaagaagaatacctagatgcacttgaagagcacggtgatgagtttgaagctaagatg
ggtgcagaagcagtattagacttgcttcgtgaacttgatcttggccaattaattgcagaa
atgcgtgaagagttaccaacaattaactctgaaacgaagcgtaaaaagatcactaagcgt
cttaagttaatggaatcgttccaccaatcaggtaataaccctgagtggatgatcatgaca
gtacttccagtattgccacctgacttacgtccattagtaccgctagacggtggtcgtttt
gcgacatctgatctaaacgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctattagatttagctgcaccagatattatcgtacgcaacgaaaaacgtatgttacaa
gaagcggtagatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtagattactctggccgttctgtaatcacggttggtcctaca
cttaagcttcaccaatgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctatggcaaattagagcgtcgcggcatggctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaagtagcggaagtatgggatgtactagacgaagtaattcgtgaacatcca
gtattacttaaccgtgcacctacacttcactgtttaggtatccaagcgttcgaacctgta
ctaattgaaggtaaagcaatccatttacacccattagtatgtgcggcttacaacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacgcttgaagctcagttagaagct
cgtgcactaatgatgtctactaacaacattctatctccagcgaatggtgagccaatcatc
gttccttcacaggatgttgtattaggtctttactacatgacgcgcgatcgcattaatgcg
aaaggcgaaggcattgtatttaaagatcctaaagaagcagaaaaagcataccgtagtggt
aacgcagaacttcacgcgcgcgttaaagtgcgtattagtcagtcaatcactaacgaagca
ggtgttgttgaagacactgtaacgcttatcgacactactgttggtcgtgcaattctgtct
ctaattttacctaaaggtatgccgtttgagtcaatcaaccaagcattaggtaaaaagcag
atttctggcttattaaacgagtgttaccgtcgtctaggtcttaaagacactgttgtgttt
gctgaccaagttatgtacaccggtttccactacgcaatgaagtcaggtgtttcaattggt
atcgatgacttagttatcccaccagttaaagcatcaatcattgaatcagctgaagctgaa
gtaactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaat
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgaaatgatggccaac
ttgtctaaagacacggttatcaatgcgaaaggtgaagaagaagagcaaccgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgccgctcagatccgtcagcta
gcaggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacgccaatcacg
gctaacttccgtgaaggtctaaacgtactacagtacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagctaactcaggttacctaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaatgaagacgactgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgacgttgtagaagcacttcgcgaacgtgtacta
ggtcgtgttgtagctgagcctgtggttatccctaatacagacactgtattagtagaacgt
aatatcatgcttgatgaaaaactgtgtgaccttttagaagagcactcagtagatgaagtt
cgcgtacgttctgttatcacgtgtgataacgactttggtgtatgtgctaagtgttatggt
cgtgaccttgcacgtggtcatatcatcaacgcgggtgaatcagtaggtgttatcgcggca
caatcaatcggtgagccgggtacacagcttacgatgcgtacattccacatcggtggtgcg
gcatcaagagcatcagctgaaaacaatgtacaagttaaaactgacggtacgttaaaacta
cataacgctaagtatgtacttaataccgacggtaagattgtaattacttcacgttcaact
gaaatcactatcattgatagcttcggtcgtgaaaaagagcgttataaagtaccttacggt
gcggtactaacagtacaagacaatgcagaagttcaaggtaacgacatcgttgctacttgg
gacccgcatagtcacccaatcgttcttgagcataagtcaaaaatctcgttcagcgatatt
gatgactcaaatactgaagcgcaaactgatgaactaaccggtttaacccgtgtagttgtt
aaagatcttgctaaagtaaatgcgaaagagcctaagcttatcatcgaaagtgaagagcgc
ggcttgcaagaaacacgtctaccttcattcactacgattgaagtgacagatggcgttaca
gcaaacccaggtgacgtacttgcacgtattccgcaagaaggttcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgacttatttgaagcacgtaagccaaaagatccagct
atcttagctgaaatcacaggtactattagcttcggtaaagaaactaaaggtaagaaacgt
ttagttattacaccagctgaaggcgatcattacgaagagatgattcctaagtggcgtcaa
cttaacgtgtttgaaggtgagcaagtgtctaaaggtgaagttatcgccgatggtcctgaa
tcaccacatgacatcttacgcctacgtggtgtgactcatgttgctaactacattgttaat
gaagtgcaagaggtttaccgtttgcagggcgttaagatcaatgataagcacattgaaaca
attattcgtcagatgctacgtaaatgtaccatccttgacggcggtgatactgagttctta
gcgggtgagcaaattgaagtagctcgcgttaatatcgctaatcgtgaccttgaaaaacaa
ggtaaaatcccagcgaagtttgaaatacaacttatgggtatcacgaaagcatcactagca
accgaatctttcatctcggcagcgtctttccaagaaacaacacgtgttcttacagatgcc
gcagtgaatggtaagagcgatgagcttcgtggtctgaaagaaaacgtaattgtgggtcgt
ctgatcccagccggtactggctttgcgtatcaccaagaccgtatggctcgccgcaagcag
ggtgaagttgttgaagagcaaacagtaagtgcagaagaggcaactcaagcactaacagat
gctctgaacgcagatttatctggaaatcaataa
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