Pseudoalteromonas agarivorans: PAGA_a1298
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Entry
PAGA_a1298 CDS
T06137
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03030
DNA replication
paga03430
Mismatch repair
paga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAGA_a1298 (dnaE)
03430 Mismatch repair
PAGA_a1298 (dnaE)
03440 Homologous recombination
PAGA_a1298 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paga03032
]
PAGA_a1298 (dnaE)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a1298 (dnaE)
Enzymes [BR:
paga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PAGA_a1298 (dnaE)
DNA replication proteins [BR:
paga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PAGA_a1298 (dnaE)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PAGA_a1298 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ATC81724
LinkDB
All DBs
Position
I:1216175..1219666
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGATHSA
GIKPIVGADFWLRSPEFPDEPSRITLLAKNNDGYKNITLLISEAYQRGHIFHRPVIDREW
LVKHKEGLIILSGAKDGDLGKALLKNNPGVIESVVSFYKQHFSDHYYLELIRTDRPLEED
YLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSQEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSEDGL
EERLQFLFPDEQERQEKRGEYDERLKVELGVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGDPGMTLAKAFEVEPR
LQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNERMKREGKAPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLQGEIVYGIGAIKG
VGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYAGALDQLGPEKTQAGR
ATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIKATPLTDNQWLDGEKD
TLGLYLTGHPINQYRRELRHYTSGKLVDLQPTNRDVLSTAAGLVISARTLINKKGNRWGL
ITLDDKSARIDVRLFPEQFEMYQEMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRIKAIKMTLNMVQIEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccagattttgtacatttacgggttcactcagacttttcgatggtcgatggc
ttagctaaaaccaagcctattgttgctaaagcgcaagagcttgaaatgcccgcgctggca
attaccgatcaaatgaacttttgtggtttagtgcgtttttatggcgcaactcacagtgcc
ggtattaaacccatagtgggagccgatttttggttgcgcagcccagagtttccagatgag
ccaagccgtattacgttgctagctaaaaacaacgacggttataaaaatattaccttatta
atatctgaagcttaccaacgcgggcatatatttcatcgcccagtgattgaccgagaatgg
ctagttaagcacaaagaagggcttattattctctcaggcgcaaaagatggtgacttaggt
aaagccttattaaaaaataacccaggcgttattgaatctgtagtgagcttttataagcag
cattttagcgatcattactatttagagcttattcgcaccgaccgtccgcttgaagaagac
tacctgcatatggcggtagagcttgcagcaaaagagcagctgcccgttgttgccacaaac
gaagtggtttttttaaagcccgaaaattttgaagcgcacgaaattcgtgtggctattttt
gacggttacacccttgatgataaacgccggcctaaacgattctcacaagagcaataccta
aaaacgcctgagcaaatggccgagctatttagcgatattcctgaagcgctgcaaaatacg
gtagaaatagccaaacgctgtaacgtaacggtgcaactaggcacttactttttgcctgat
tacccaacaggctcgttaaaaattgaagactttttagttaaagtttcagaagacggcctt
gaagagcgactacagtttttattccccgatgaacaagagcgacaagaaaaacgaggcgaa
tacgacgagcgcttaaaagtagagcttggcgtaattaaccaaatgggttttccaggctac
ttcttaatcgtaatggagtttattcagtggagtaaagataacaatattccagtggggcca
gggcgtggttcgggtgcgggttcattagtggcatatgccctaaaaattaccgaccttgat
ccgcttgaatttgacctactctttgagcgattcttaaaccctgaacgtgtatcaatgccc
gatttcgatgtcgatttttgtatggacaggcgtgatgaggtaattgaccatgtatcggca
ttgtatgggcgggacgcggtatcacaaattattacctttggtaccatggctgcaaaagcg
gtaatacgcgatgtaggccgtgtacttggccacccttatgggtttgtcgatcgaatttct
aagctgatcccaggggatcccgggatgacgcttgccaaagcctttgaggtagagccgcgt
ttacaagaagcctacgatggcgactcagaggtaaaagatttaatcgatatgtgtcgcatc
ctcgaagggtgtacacgtaatgccggtaaacacgccggtggtgttgtaatatcgccgacg
accattaccgactttgctgcactttattgcgatgacgaaggtaagtttccggtaacacag
tttgataaaaacgatgtagaaaccgcaggcctagttaagttcgatttcttgggcttacgt
accttgacgattttgcagtgggctgtggatatgaccaacgagcgcatgaagcgcgaaggc
aaagcgcccgttgatataaataccattccactggatgataaaaaaagtatagagctatta
cttcgcgccgaaacaaccgcggtattccagctagaatcgcgcggcatgaaagacctcgta
cgtcgattaaagcccgattgctttgaagatatgattgcattggtagccttgttccgccca
ggcccactgcaatcaggcatggtagataacttcatcgaccgtaagcttgggcgagaagaa
atttcatacccagatgcccaataccaacacgaaagcttaaagcccatacttgagcctact
tacggcattattttgtaccaagaacaagtaatgcaaattgcccaagtactagcaggctat
acgcttggtggcgccgacatgctacgtcgtgcaatgggtaagaaaaaacccgaagaaatg
gccaaacagcgttcaacctttgaagaaggcgcacgcaataatggtatagacggcgaactg
gcgattaaaattttcgacctggtagaaaaattcgcaggttatggttttaataaatctcac
tcggcagcgtatgcactggtttcgtaccaaacgctgtggatgaaaacgcaccatccggca
gagtttatggctgcggtaatgtcggccgatatggataacaccgacaaaatagtaatcttg
gtggatgaatgtgaaaacatgaagctcaccttattaccgcctgatgtaaatgccggagaa
tttaaatttacggtaaacctgcaaggtgaaattgtttacggtattggtgctattaaaggt
gtaggtgaagcgccggtagaggctattttagaagcgcgcgcaaaaggcggcccatttaaa
gatttatttgatttttgtgcccgtgtagatttaaaacgcttaaataaacgtgtgaccgaa
aaattaatttacgccggtgcacttgatcaactcgggccagagaaaacccaagcagggcgt
gcaacattactggcaagtttaaaagatgccatgcgcgctgccgatcagcacaacaaagct
gagcaacttgggcaaagcgatttatttggcttactggccactgagcctgatgaagttgag
caagcctttattaaagccacaccgcttaccgataaccaatggcttgatggcgaaaaagac
acgctaggcctttatttaacagggcatccgataaatcagtatcgtcgtgaacttagacat
tacaccagcggcaagctggtggatttacagccaacaaatcgtgatgtactctctacggcg
gcgggtttagttatttcagcgcggaccttaattaataaaaaaggaaatcgttggggctta
ataactttagatgacaagagcgcccgtattgatgtacgcttgtttcctgaacagttcgaa
atgtaccaagaaatgcttcaagtaaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaaacgcattaaagcgattaaaatgacgctgaacatggtgcaaatcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccttataaaatgggaacgtgtccgatcaag
gtttattaccagcgccccgatgcgttggctcaattaaccctagggatcgaatggtgtgtt
acgccgagcgacgacttaattcataagttatcactcatggcggcacaagatgtagaacta
gaatttaactga
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