Pseudoalteromonas agarivorans: PAGA_a1463
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Entry
PAGA_a1463 CDS
T06137
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
paga
Pseudoalteromonas agarivorans
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paga03019
]
PAGA_a1463 (hrpA)
Enzymes [BR:
paga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAGA_a1463 (hrpA)
Messenger RNA biogenesis [BR:
paga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAGA_a1463 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
ResIII
AAA_25
NTPase_1
Cas3-like_C_2
AAA_11
NACHT
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ATC81866
LinkDB
All DBs
Position
I:1380799..1384686
Genome browser
AA seq
1295 aa
AA seq
DB search
MVNLGQLFGELKTCLKKDQFIFEKRLHGVKKIQDETKQANALEKIAADITRSQQLREKRL
AELPAVTYPEQLPVSQKKDVIKDAIANNQVVIIAGETGSGKTTQIPKMCLELGRGVDGFI
GHTQPRRLAARSVANRIAEEMKCELGQQIGFKIRFSDQVSNNTYVKLMTDGILLAEIQQD
RFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSKHFDDAP
IIEVSGRTFPVEVRYNPISDINKDAMEAEGDQLQGIFDAVDELCAEGPGDILIFLNGERE
IRDTAEALSKRNLKHTDVLPLYSRLSNAEQNRIFAPHSRRHIILSTNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRCGRVEAGICIRLYSQDDFISRPE
FTDPEILRTNLASVILQMLALGLGDMSEFPFVQAPDSRNINDGLTLLEELQAIKPSKKRH
QTSLTQSGRELSRLPVDPRLAKMVLTANKLGALREVIIIVAALSIQDPRERPQEKRAAAN
EKHSRFDDPDSDFIAFLNLWNYLEEQQSELTNSQFRKLCQKDFLAYMRIREWQDIVYQIS
TVCNEMKIKATTQVADSELIHKALLSGMLSHIGFKDEKQVYKGARNSQFHIFPGSGLFKK
SPKWIMSAELVETSKLYARINAKIDINWVEPLAQHLVKRSYSEPHWEKKPGAVIAFEQQT
LYGLLVVNKRRCVYSNIDPKVSRELFVRTALVEQELGLNEQFLAYNRELIEDIQVLEHKS
RRRDILVDEQTLFEFYDKKIPKEINNRAAFIKWYKAQKQKDKRYLYMTREELMQHGASNI
TEFDYPDTWQQDNIILPLSYHFDPGQAVDGVAVQIPVALLNQVQETGFDWHIPAFRHELI
SGLIKSLPKSLRRNFVPAPNYADAVLAAIEPMQGSLLDALTTRLLRMTGVKVDIEAWDLN
ALAPHLRLQFEVRDEHDKLLARGLDLAKLKAQLQGKVTDTLSKVADKGIEKADLTQWDFG
ALPASYVKKQGQYEIKAYPALVDKKSTAAIELFDSEEKAQQAHQQGLRRLVLLNVPSPIK
YLQQNLPNKAKLGLYFNPFGKIADLIDDCIAAGVDSLLIKHGDIRDEDAFDKVKEQIRGE
LGDAVVEIATQVEQVLSIAHALHKKMKGRVDLTMITAHGDIKSQLESLIFKGFVSAHGAN
KMPDLIRYLKAIQKRLEKLPVDPNRDRLCVLELEKVAQEYKKLVNKIPKGLPIPQQVNAI
FWMQQELRVSLFAQTLGTPYPISAKRVMNAIKEIE
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaacctaggtcagttgtttggcgagcttaaaacgtgcttaaaaaaagatcagttt
atatttgaaaaacgcttacatggcgtaaaaaaaatacaagacgagactaagcaggccaat
gcccttgaaaaaatagcggctgatattacccgcagccagcagctacgtgaaaaacgttta
gctgagctgcccgctgtaacgtaccctgagcaattaccggtaagtcaaaaaaaggatgtc
attaaagacgccattgcgaataatcaagtggtgattattgccggtgaaacaggctcaggt
aaaaccacacaaataccaaaaatgtgtttagagcttggccgtggggttgatggctttatt
ggccatactcagccaagacgtttagccgcgcgcagtgtagctaaccgcattgctgaggaa
atgaaatgtgaacttggccaacaaatcggttttaaaatacgttttagcgatcaggtttct
aataatacgtatgtaaaactgatgaccgacggtattttgctcgccgaaatacaacaagac
cgctttttaaatcagtacgacaccatcattattgatgaagcccatgagcgcagcttaaat
atcgattttattttagggtatttaaaaaacttactgccaaagcgccccgacttaaaagtt
attattacctcggcgaccattgatcctgaacgtttttcaaagcactttgatgatgcgcca
attattgaagtatcgggacgtacattccccgttgaggtgcgctataaccctataagcgat
ataaataaagacgctatggaagccgaaggcgaccaactgcaaggtatttttgatgcggta
gatgagctgtgcgctgaagggcccggggacattctcatatttttaaatggcgagcgcgaa
atacgcgatactgcagaggcgctctctaaacgtaatttaaaacacaccgacgtattacca
ctttactcgcgcttatctaacgcagagcaaaaccgtatatttgccccgcattcgcgccgc
catatcattttatcaaccaacgtggccgaaacctcattaacggtgccgggtattcgctat
gtaatagacccaggtacagcgcgtattagccgttacagctatcgtactaaagtacagcgt
ttacctattgagcctatttctcaggcaagtgcgaatcaacgtatgggacgctgtggccgt
gttgaagcgggtatttgtattcgcttgtattcgcaagatgactttatatctcgcccagaa
tttacagacccagaaatactgcgcactaatttagcctctgttattttgcaaatgttggca
ttagggcttggcgatatgagcgagtttccgtttgtacaagcgccagatagtcgcaatatt
aacgatggtttaaccctacttgaagaacttcaggcgattaagccgagtaaaaagcgccat
caaacgagtttaacgcaatcagggcgtgagcttagccgcttaccggtcgacccgcgttta
gctaaaatggtgttgacggctaataagctcggtgcactacgagaagttattattattgtg
gcagcgctgtcgattcaagacccccgagagcgcccgcaagaaaaacgcgccgcagcgaac
gaaaaacacagtcgctttgatgaccctgactcggattttattgcttttttaaatctttgg
aattacctagaagagcagcaaagtgagctgacaaatagccagtttagaaagttgtgccaa
aaagactttttagcttatatgcgtattcgtgagtggcaagacattgtttatcaaataagc
actgtgtgcaacgaaatgaaaattaaagccaccacgcaagtggctgactcagagctaata
cacaaagcgttactgagcggcatgttaagtcacataggctttaaagacgaaaagcaagta
tataaaggcgctcgtaatagccagtttcatatttttccgggttctggattatttaaaaag
agccccaaatggattatgtcggcagagctggtagagaccagtaaactatacgcacgtatt
aatgccaaaatagatattaattgggtagagccccttgcacagcatttagtaaaacgaagc
tattctgagccgcattgggagaaaaaaccaggcgctgttatcgcgttcgagcaacaaacc
ttgtacggcttattggtggttaataaacgccgctgtgtgtatagcaatatagaccctaaa
gttagtcgtgagctgtttgtacgcaccgcccttgtagagcaagagcttggcttaaatgag
caatttttggcgtacaaccgcgagctaatagaagatattcaggtacttgagcataaatcg
cgacgtcgcgatattttggttgatgagcaaacgttatttgaattttacgataaaaaaata
cctaaagaaattaacaaccgtgcagcctttattaagtggtataaagcccaaaagcaaaaa
gacaaacgctacctatacatgacccgtgaagagcttatgcaacacggtgcaagtaatatt
actgagtttgattaccctgatacatggcagcaagataatatcattttgccactgagctat
cattttgatccaggacaagctgttgatggggtggctgtacaaataccggtagcactttta
aaccaagtgcaagaaaccgggtttgattggcacatacctgcctttaggcatgagctaata
agcggtttaattaaatcgttacctaagtcgttacgtcgtaactttgtacctgctcccaat
tacgctgatgctgtactggcagccattgagcctatgcaaggcagcttacttgatgcactt
actacacgcttactaagaatgacaggcgtaaaagtagatatagaagcgtgggatttaaac
gcactggcgcctcatttaagattgcagtttgaggtgcgtgatgagcacgataaattgcta
gcacgcggactagatttagcaaaactaaaagcacagctgcaaggcaaagtaactgatacg
ctatcaaaggtggccgataaaggcattgaaaaagccgatttaacacaatgggactttggc
gctttgcctgcctcgtacgttaaaaagcaaggccaatacgaaataaaagcttacccagcg
ctggtagataaaaaatccacagcggcaattgagctctttgatagtgaagaaaaagcccag
caagcgcaccagcaaggtttacggcgtttagtattattaaatgtgccgtcgccaataaag
taccttcagcaaaacttgcctaataaagccaaactgggcttgtactttaatccgtttggg
aaaattgcagacttaattgacgattgtattgccgccggcgtagacagcttattaataaag
catggcgatatacgcgatgaagacgcttttgataaagttaaagagcaaattaggggcgaa
ctaggcgatgctgtggtagaaattgccacccaggttgaacaagttttaagcattgctcat
gcgttacataaaaaaatgaaagggcgtgtcgatttaactatgataactgcccatggcgat
ataaaatcgcagcttgagtcacttatcttcaaagggtttgtgagcgctcacggtgcgaat
aaaatgcccgacctaattcgttatttaaaagcgattcaaaaacgtttagaaaaactacct
gttgatcctaaccgcgatagactgtgtgttttagaacttgaaaaagtagcgcaagagtac
aaaaagctcgtaaataaaattccaaaaggcttacctattccgcaacaggtaaacgctatt
ttttggatgcagcaggagcttagggtgtcactgtttgcgcaaaccttaggtaccccatat
cctatttctgcaaaacgcgttatgaatgcgataaaagagatagaataa
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