Pseudoalteromonas agarivorans: PAGA_a2301
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Entry
PAGA_a2301 CDS
T06137
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGA_a2301 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paga03019
]
PAGA_a2301 (rne)
03009 Ribosome biogenesis [BR:
paga03009
]
PAGA_a2301 (rne)
Enzymes [BR:
paga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAGA_a2301 (rne)
Messenger RNA biogenesis [BR:
paga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAGA_a2301 (rne)
Ribosome biogenesis [BR:
paga03009
]
Prokaryotic type
rRNA processing factors
PAGA_a2301 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATC82591
LinkDB
All DBs
Position
I:2163405..2166698
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AA seq
1097 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTDLKEALSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWDAIQQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYEQVVAPEPESFEMAKPAAAPVREEPMLKGVVMPSTPAPQAKV
DKPAAPVAVPKVEGGLLAAIGNWFKSLFAGESEEEKQAKEKAEQEKQQQTRNNNRRGNSD
NRRRNNNQRRRNNSRSKPRGERPAEEEVKTESTANESQEKNENRNKRRRNPNSRKRNDNR
NNDNRTADKEQVKTDAKANETEAKQSTEPKEQKPKVRRQRRNVRKKVRIQDENTEQVKAS
DTTEQPQQSTETAKVEQPKEQAPAAKQTANEQKSEQTKPAPVKEQAPKAQPEQEEKPVAA
ASTDEANSEDEQGQTRTRSRRSPRHLRASGQRRRRPEQGEATEEKADEAPAFVPVADQAA
AEYEAELKAKAEQPTSNDASENVEQALAVEDLAKVEAAPKAEQPTANDDAVQTVDPETAE
EPVVVTEQPITTSEPVKSEPEVAEQPATPEPVKAEPEVAEQPATPEPVKAEPEVAEQPAT
PEPVKAEPEVAEQPATPEPVKAEPEVAEQPATPEPVKAEPVKAEPEVAEQPAKPEPVKAE
TEVAEQKDANAKTVISKGAASAPMAQPTPVADSDVKHTSVAMAHDKRELVPDSGLRAGSI
KPAGRASSDMTKTMSAE
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcacacgcattgaaccctctttagaagcggctttcgtagattac
ggcgccgatcgtcatggtttccttcctttaaaagaaattgctcgtacttacttcccacaa
ggttatacttttcatggtcgcccaaatattcgcgacgtgattaaagaaggccaagaagta
attgtacaagttgataaagaagagcgcggccaaaaaggcgcagcacttactacctttatc
agcgtagcgggtagctacttagtgctaatgccaaacaaccctcgtgcaggcggtatttct
cgtcgtattgaaggcgatgagcgtacagaccttaaagaagcacttagccgattagaactt
cctaaaggtatgggcttaattgtacgtacagcaggtgttggcaaatcgtttgaagaatta
aactacgatttaaaagcacttttagtacattgggatgcaattcaacaagcagccgacagt
gctaaagcaccgtttttgattcaccaagaaagcaatgtgattttccgcgctattcgcgat
tatttacgtcgtgatattggtgaaatattaattgataaaccacgtgtatttgaagaagct
aaagcgcacattgagcgttttcgccctgactttatgagccgcgtaaagctttatcaaggc
gacacgccattgtttacgcattaccaaattgaaagccaaattgagtctgcgttccaacgt
gaagtacgtttgccttcaggtggttcaattgtaattgacccaacagaagcgcttacctct
attgatatcaactcgtctaaagcaacaaaaggcggagatatcgaagaaacagcactgaat
actaacttagaagcggctgatgaaattgcccgtcaattacgtcttcgcgacttaggtggc
ttaattgttatcgactttatcgatatgacaccgccacgccatcagcgtgaagtagaaaac
cgcttaaaagatgccgctcgtccagatcgtgcgcgtgtacaaattggtaaaatttcgcgc
tttggtttacttgaaatgtcgcgccagcgtttgcgtccttcactaggtgaagcaagccaa
ggcccatgtccgcgttgtagtggccaaggtactattcgttctaacgagtctatcgccttg
tctattttgcgtttaattgaagaagaagcaattaaagacaacacagcacaagtaaatgca
caagtgcctgtagcggttgccgcttatttattaaacgagcagcgcagaagcgttcatcgt
attgaaaaacatcataaatgtgatgtggttattattcctaatcaacacatggaaacacca
cactacgaagtgatgcgtttacgtaaagacgaaacactagaaacagtaagttacgagcaa
gtagttgcacctgagccagagtcgttcgaaatggctaaaccagcagctgcgcctgttcgt
gaagagccgatgcttaaaggtgttgttatgccttcaacgccagcgccacaagctaaagta
gacaaaccagcagcgcctgttgctgtacctaaggttgaaggtggcctattggctgctatt
ggtaattggtttaagtcgttatttgctggtgaaagcgaagaagaaaagcaagcaaaagaa
aaagctgagcaagaaaagcaacagcaaacacgtaataacaatcgccgtggtaacagtgac
aaccgtcgccgcaataacaaccagcgtcgtcgtaataactcacgctctaaacctcgtggt
gaacgccctgctgaagaagaagtgaaaactgaatctaccgcgaacgaaagccaagagaaa
aacgagaaccgcaataagcgccgtcgtaatcctaactcgcgtaagcgtaacgataaccgt
aataacgacaatcgtaccgccgacaaagagcaagttaaaacagacgcaaaagcgaatgaa
actgaggctaagcaaagcactgagcctaaagagcagaagccaaaagttcgccgtcaacgt
cgtaatgttcgcaaaaaagtacgtatccaagatgaaaatactgagcaagtaaaagcatct
gatacgactgagcaaccgcagcaaagcactgaaacagctaaagtagagcagcctaaagag
caagcgccagcagcaaagcaaactgcaaatgagcaaaagtcagagcaaacaaaacctgca
cctgtgaaagagcaagcgcctaaggcacaacctgagcaagaagaaaagccagtagctgca
gcgtcaactgacgaagcaaactctgaagatgagcaagggcaaacacgtacgcgttcacgc
cgttctcctcgtcaccttcgcgcttcgggccagcgtcgccgtcgtcctgaacaaggtgaa
gctacagaagaaaaagcagatgaagcaccggcatttgtgccagtagcagatcaagctgcc
gctgagtatgaggcagagctaaaagcaaaagctgaacagccaacctcaaacgatgcatca
gaaaatgttgagcaagcgttagctgtagaagatttagctaaagttgaagctgcccctaaa
gcagaacaaccaacagccaatgacgatgcagtacaaactgttgatcctgaaacagctgaa
gagccagttgttgttactgagcaaccaataacaacatctgagcctgttaaatcagagcct
gaagtagctgagcaaccagcaacaccagagcctgttaaagctgagcctgaagtagctgaa
caaccagcaacaccagagcctgttaaagctgagcctgaagtagctgaacaaccagcaaca
ccagagcctgttaaagctgagcctgaagtagctgaacaaccagcaacaccagagcctgtt
aaagctgagcctgaagtagctgaacaaccagcaacaccagagcctgttaaagcagagcct
gttaaagcagagcctgaagtagctgagcaaccagcgaaacctgagcctgttaaagcagag
actgaagtagctgagcaaaaagatgccaatgcaaaaacggttattagcaaaggggctgca
agcgcacctatggctcaaccgacaccagttgctgatagcgacgtaaagcatacatcagtt
gccatggcacacgataaacgtgagttagttcctgatagtggcttacgcgcagggtcaatt
aaacctgcaggtcgtgctagttcagacatgactaaaacaatgagcgctgagtaa
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