Pseudoalteromonas agarivorans: PAGA_a2323
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Entry
PAGA_a2323 CDS
T06137
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAGA_a2323 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a2323 (mfd)
Enzymes [BR:
paga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAGA_a2323 (mfd)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PAGA_a2323 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ATC82610
LinkDB
All DBs
Position
I:2185018..2188491
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLTGSALSIAIAEGVKQQNDLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRT
APASFIYGSTLNFKVGDKLDTHNLRSNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSV
HPFRLDFFDDELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADVERFRINYRDKFGA
SSEQDSVYMQVSKGTWPAGIEYYMPLFFEKLATIFDYLPNTTTVMQLGDLEHAADTFWHD
VNVRYENRKVDPLRPLLAPSELYQPINELFSNLGEFSRIRLSQAKLPTKAGNKNLNVSEL
PAVRIDHKQHEPYGAFINYVAEQKKKKSRILLSVESDGRRESLLSVLKPSGLKFKEFESL
QQFTQSQSDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPIVHLDHGVGRYQGLQTIDAAGVITEFVTITYAGEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAERVRDVAAELLDIYAQRQAKPGNKFALDGQSYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKLAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAVLVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMADGKLDIVIGTH
KLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKSLRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDSDLIREAILREIKRGGQVYFLHNNVETIERVSQEISE
WVPEASATSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDAKALSKDATKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALKNGKEPTLENLLQQQTEVDLKLPAL
LPDDYIHDVNARLGMYKRIASCDNLADMDELQVELIDRFGLLPDATKNLFSMQQLKMRAS
DLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPHVYKMDGANKLRFAINEVNPRER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccgtgggtaaaatctcaaaaagataaaattcaa
tgggggcagctaactggcagtgcactaagtatagccattgcagaaggtgtaaaacagcaa
aacgatttagtgcttattgttacgccagatacgccaagcgcattgcgacttgaaaccgag
ctcgaatacttattgccagataacccggtaatggtatttcctgattgggaaaccttgccg
tatgaccatttttctccgcaccaagatattatttcagcgcgcttagccactttaaacact
ttaaaaaacgagcagcaaagcgtacttatagtgcctgtatctacgttaatgctacgtact
gcgcccgcttcgtttatttatggctctacccttaattttaaagtaggcgataaactcgac
acccataacctgcgcagtaatttagaacaagcaggatatttaaacgtacaacaagtaatg
gagcatggcgaatacgcaatacgtggctctattgttgatttgtacccaatgggcagtgtg
cacccatttaggctcgacttttttgacgatgaactcgactctattcgtttatttgacgta
gaaacccagcgctcagatgaaaaagtagataaaattgagttactgcccgcgcatgaattt
ccaaccaacgaagcagacgttgagcgttttagaataaattatcgcgataaatttggggcc
agctcagagcaagactctgtttacatgcaagtaagcaaaggtacttggcctgccggtatt
gaatactacatgccgctgttttttgaaaagcttgccaccatttttgattacttgccaaac
accactacggttatgcaactaggtgacttagaacacgccgcagataccttttggcacgat
gtaaacgtacgctacgaaaaccgaaaagtagatcccctgcgtccactactggcgcccagc
gagttgtatcaacctattaatgagttgttttctaatttaggtgagttttcacgaatacgc
ttatcgcaagctaaattacccactaaagcaggcaataaaaacttaaatgtgagcgagctg
cccgcagtaagaatcgatcataaacaacacgaaccctacggcgcgtttattaactatgtg
gcagaacaaaaaaagaaaaaaagccgtattttattaagtgttgagtctgatggtcgccgc
gagtctttattaagcgtgcttaagccaagcggcttaaagtttaaagaatttgaaagctta
cagcaatttacacaaagccaaagcgatgtaggcttaattgtaagccctcttgagcaaagt
gttgtactgggtacaaaaccgagcctttctattattaccgagcaagagctgttaggtatt
aaggtgtcgcaacgcaggcgccgtaaacataaatacgaagcaagccaagatgcgttaatt
cgtaacttagccgagcttaaagagggccagccaattgttcaccttgatcacggtgttggc
cgctatcaaggcctgcaaacaattgacgcggcaggggtaatcactgagtttgttaccatt
acctatgccggtgaagcaaaactgtatgtgccggtatcggcactgcatatgctaagccgt
tattcaggcggtgaagaagcaagcgccccacttcataaacttggctcagatgcctgggag
aaagccaaaaagcgggccgccgaaagagtacgcgacgtagccgcggagctgttagatatt
tacgcacagcgccaagcaaaaccaggtaataaatttgcactcgatgggcaaagctatcgc
caatttagcgacagctttccatttgaagaaactgacgatcagcgtaatgctattgaagcc
gtacttggtgatatgcaatcaaaacttgctatggaccgtttagtgtgtggtgatgtaggc
tttggtaaaacagaagtggctatgcgcgccgcgtttgtagcggttaacgataacaaacaa
gtagccgtattagtaccaaccaccctgctggctcagcaacattacgaaaactttaaagac
cgttttgccgattttcctatcgaagtgggagtgttgtcgcgctttaattcaactaaagag
caaaaagacacgcttgaaaaaatggccgacggtaaacttgatatcgttattggaacgcat
aagttaattcagcaagatattaaatttaacgatttaggtttactgattgttgatgaagag
caccgctttggtgtgcgccaaaaagaaaaaataaagtcattacgtgctgatgtagatata
ttaacgcttactgcaacgcctattccgcgtactttaaatatggcgatgagcggcatgcgt
gatttatctattattgccaccccacctgctaagcgtttagcggttaaaacctttgtacgc
caacgcgacagcgacttaatacgcgaagccatactgcgtgaaattaaacgcggcggccaa
gtgtactttttgcataacaatgttgagactattgagcgagtctcgcaagagatcagcgaa
tgggtgccagaggctagtgccacctctgctcatgggcaaatgcgcgagcaagagcttgag
caaataatgacagacttttatcatcaaaaatacaatgtactggtatgtaccaccattatc
gaaaccggtattgatgtgcctactgctaatactattataatggacagagccgataaactt
ggccttgcgcaattacaccaattacgcggtcgtgttgggcgaagccaccaccaagcgtat
gcttatttattaaccggcgatgctaaagcactttctaaagatgccaccaaacgcttacag
gcaatcgagtcgttggaagatttaggcgcaggttttgcccttgccacacatgatttagaa
atacgtggtgcgggtgagctattaggcgacgatcaatcagggcaaatgcaaactattggc
tttagcttgtatatggaaatgctagagcaagcggttaatgcccttaaaaatggtaaagag
ccaacgcttgaaaacctgcttcagcagcaaactgaagttgatttaaaactccctgcctta
ctacctgatgattacatacacgatgttaatgcgcgtttaggtatgtacaagcgcattgca
agttgtgataaccttgccgatatggacgaattacaagtagagctaatagaccgctttggt
ttattacctgatgccactaaaaacctatttagtatgcagcaactaaaaatgcgtgccagc
gatttaggaattactaaaatagaggcaaaccctaaagggggctactttgaatttagccaa
aatacgaaggttaatcctagcttcatcataggcttgatacaaagtgcaccccatgtgtac
aaaatggatggcgcaaataaattgcgctttgcaattaatgaggtaaaccctcgtgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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