Pseudoalteromonas agarivorans: PAGA_a2347
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Entry
PAGA_a2347 CDS
T06137
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PAGA_a2347 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a2347 (recD)
Enzymes [BR:
paga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PAGA_a2347 (recD)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAGA_a2347 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
UvrD_C_2
RecD_N
Viral_helicase1
Helicase_RecD
UvrD-helicase
SH3_13
AAA_22
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
NTPase_1
AAA_28
Glutaminase
T2SSE
CbiA
SRP54
Mg_chelatase
AAA_24
FtsK_SpoIIIE
AAA
TrwB_AAD_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATC82632
LinkDB
All DBs
Position
I:complement(2210249..2212207)
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AA seq
652 aa
AA seq
DB search
MSDYPMQQSLFDEPPAPAQPLNTVELLDYLLDEKRIRMVDVKLALMLCDNQQNDVFYIVL
LLCLAQQSQHSCLTLKEVDWQNPFNLRQSDFTKTEGNVPNITSPFNEAFNYLDALSCLSA
HNSVGEAKPLQLFNERLYFARLADYEHTLATRLLAMSERHLNINTQLLSQLLNDYFVDNS
ALAIDWQKVACAIAATKGFSVITGGPGTGKTTTVTKLLAILQSLYKSAPLSIKLVAPTGK
AAARLSESILGAKEQLKIIPEDIKALIPDSAQTIHRLLGVKPFTNKFKHNSTNPLHLDVL
IIDEASMVDLSLMAKLIEALPAHARLILLGDKDQLASVDTGSVMSDLCQGLALGETPNYS
QARCDELNTLCFKGEAKLAAPGHSEFKLADCIAFLQHSYRFDAQSGIGQLALAVNTNHNG
ILKYVEQQSTQGKFNDVILDYDFVAKPIEKLINSAAKHYAHYLNLIAQGASVADVHAAFS
QYQLLAAVREGDYGVNSLNSRIERALVQQGLISVSPNQRHYSGMPIMVSQNDYQLKLFNG
DIGILMPDESGQLKALFIDEQNTVRAFSPARLPAHDKVYVMTIHKSQGSEFSYTAMVLPP
LKHASMGVNRQLVYTGITRAKNTFELVADKKVLQLAMSKSVSRASGLYERLK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactaccctatgcagcaaagcctgtttgatgagccgccagcacctgcccaaccg
ttaaatacggtggagctgcttgactacttattagatgaaaaacgcataagaatggtagat
gtaaagcttgccttaatgctgtgtgataaccagcaaaacgacgtgttttatatagtgtta
ttgctgtgtttagcacagcaaagccagcatagctgtttaacattaaaagaagtcgactgg
caaaacccgtttaatttacgccaaagcgactttactaaaaccgagggcaatgtaccaaat
attacatcgccttttaacgaagcctttaactacctcgatgcgcttagctgtttaagtgcc
cataacagtgtgggcgaggccaaacccttacagttatttaacgaacggctttattttgcg
cgcctagctgattatgagcacaccttagctacacgtttacttgcgatgagtgagcgccat
ttaaatataaatacccagttactcagccaattattaaatgactactttgttgataattca
gcgcttgcgattgattggcaaaaagtagcctgtgctattgcagcaacaaaaggctttagc
gttattacgggcgggccaggaactggtaaaaccaccaccgtgactaagctattagctatt
ttacagtcgctttataaaagtgcacctttaagcattaagctggtggcgcctacaggtaaa
gctgcagcacgtttaagtgaatcaattttaggggcaaaagagcaacttaaaattattcct
gaggatataaaggccttaattcccgatagtgcgcaaaccattcaccggcttttaggggtt
aaaccctttactaataaatttaagcataacagcaccaacccgctgcatttagatgtactt
attattgatgaagccagcatggttgatttatcactcatggctaaattaatagaagcactg
cctgcgcatgcgcgtttaatattgcttggcgataaagaccaacttgcctcggtagatacc
ggcagtgtaatgagtgacttatgccaagggttagcattgggtgaaacgcctaattactcg
caagcacgatgtgatgagctcaatactttatgttttaaaggagaggctaaattagcggcg
cctgggcatagcgaatttaaactagccgattgcattgcgtttttacaacacagctaccgg
tttgatgcacaaagtggcattggccagcttgcgctggcggttaatactaaccataacggt
attttaaaatacgtagagcagcaaagcacacaagggaaatttaacgatgttattttagat
tatgactttgttgcaaaacccatagaaaaattaataaacagtgctgctaagcactacgct
cattatttaaatttaatcgcccaaggggcaagtgttgcagatgttcacgcggcgttttct
caatatcaattattagccgccgtgcgtgagggtgattacggcgtaaatagcttaaacagc
cgcattgagcgcgcacttgtgcaacaagggttaatatcggtaagcccaaaccagcgccat
tacagtggtatgcctattatggtgagccaaaacgattatcaacttaagttgtttaatggt
gatattggtattttaatgcccgatgaaagcgggcagttaaaagctttatttattgatgag
caaaacacggtacgggcgttttcacctgcgcgcctgcctgctcacgataaagtgtatgta
atgaccatacataaatcgcagggctcggagtttagttatacagctatggttttaccgccg
cttaaacacgccagtatgggcgtaaataggcagctggtgtacacaggcataacacgtgct
aaaaacacctttgagctggtggccgataaaaaagtactgcaattggccatgagcaaaagc
gtatcaagagcctcaggattgtatgaaagactaaagtag
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