Pseudoalteromonas agarivorans: PAGA_b0114
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Entry
PAGA_b0114 CDS
T06137
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
paga
Pseudoalteromonas agarivorans
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_b0114 (sbcC)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAGA_b0114 (sbcC)
Archaeal homologous recombinant proteins
PAGA_b0114 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
FKBP15
ABC_tran
SMC_N
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ATC84082
LinkDB
All DBs
Position
II:complement(86579..90229)
Genome browser
AA seq
1216 aa
AA seq
DB search
MKITAVRIHNLASIVDAEIDFTQAPLKDAGLFAITGDTGAGKSTFLDAICLALYTKTARL
KGDKGNLIDFNGDSIKLNDARNLLRRGKWEGFAEVDFVGQDKQLYRARYVITRTHKKATG
KLKVAEHTLLTLPDETLIADKSQTIKEVENKIGLSFDQFSRAVLLAQHEFAAFLKATGDE
RAQLLECLTGTDKFSLIGKRIFERNKALKDQYELLNASLASYTLLSDDELSAKQTLRDEL
LKKIEQTKKTHAATEQDLNWYKQAASLSQALEHAIEQQQHAQQQLDAIAKQSEQAKQAQS
ALEIKDNRKRHEYLTAQNKALSTQISDLKAIDHAALIKEQAATLTTKQSELKTAQEQKQT
AEPIIAKARELDSQLAIHAQTITNLTQQSEKEQQQLSELQTQYTQSQHALDEATKLSTGH
QTWLNEHTQLKPLANDWNYYQHSFNTYLSANEQIKATASQNQQLLEEQTKQAALLAEQTK
KVELQEQQLAHQQKDLNQLSEQQRQFNIEQCDSKLKNIEYLKDQRLRYQQFNQEIKHSTQ
QQAAVAAKLVHSEQTQTTLQQSLASCEQALKHSEYALNQARLRASENVEHLRTQLTPNEP
CVVCGAKEHPYASSQNPQLNNLIADFETSYNLAKQQHDSAQAKLHQHQTQHAVLVTEHAQ
YSQAIQSAQAKQLEIKTTMQGARTELNDLTAQQLDETYAQLSTQKSHYFESQKQQTALQE
KVNQLINNLKAEQHTQQQLHNQHVELTNKLGQINTKHAELNTQVNELTSTLNAQFEHSDF
WQQLQNNTLNMSDLSQQVEQYQQTQVQLEQSQKQIDSANQQLQQLTPLIAKSEQALKVLN
DDLAKAQQLQNTTRTERLALFNNEPLSADDYQAKLNTQLEQCQKALHTSQQAHDSAIKKR
DEHAITLKNIEQRLAEQIQEQSTLEERYNDWFSDFKAQYSEANHEQIAILLTLTSEQIKE
QLMQFEQRLAALTDANAALKQQQKAQTDHQNTNKPEKSESQLAEQETSLANKQTELQNSL
LGTNTALEQHNQNAKALKGKHAELATLKKQVEQWHVLNKVLGDATGKTMRNLAQTQTLKI
LLHYANSHLKTLNKRYELTAIAQSLDIAIIDRDMADEQRSVNTLSGGESFLVSLALALGL
ASLSSNKVQINSLFIDEGFGTLDSETLSVAMDALDSLQAQGRKVGVISHVSEMSERVATQ
VHVSKKSGGYSTVEVL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaccgcagttcgtattcataacttagcctcaatagtcgatgccgaaatcgac
tttactcaagctccactaaaagacgctggtttatttgcaataaccggcgacacaggcgca
ggtaaaagcacctttttagatgctatttgtttagcgctttatactaaaacagcgcgctta
aaaggcgataaaggcaacttaattgattttaacggcgacagcataaagctaaacgatgcg
cgtaacttactgcgcagaggcaaatgggaaggctttgctgaagttgattttgttggccaa
gataaacaattataccgcgcacgctacgttattacccgtacccacaaaaaggcaacaggc
aagttaaaagtagctgagcatacgttactaaccctgcccgatgaaaccctaatagccgat
aaaagccaaaccataaaagaagtagagaacaaaatagggctaagctttgatcagttttcg
cgtgcggtattattagcacagcacgagtttgcagcctttttaaaagccacaggcgatgaa
cgcgcacaacttttagagtgtttaaccggcaccgataaatttagcttaataggtaaacgt
atttttgagcgtaataaagcgctaaaagatcaatatgaattacttaatgcaagccttgca
agctacaccttgttaagcgatgacgaattaagtgctaaacaaaccctgcgcgatgagtta
cttaaaaaaattgagcaaactaaaaaaacgcatgcagcaacagagcaagacttaaattgg
tataaacaagcagctagcttatcgcaggcactagaacacgcaatagagcagcaacaacac
gcgcaacaacagcttgatgcaatagcaaagcaaagtgagcaagctaaacaagcacaaagc
gcccttgaaataaaagacaaccgcaaacgtcatgagtacttaacggcgcaaaacaaagca
cttagtacgcaaataagcgatttaaaagcgattgaccatgctgcgcttataaaagagcag
gccgcaacacttacaacaaagcaaagcgagttaaaaacagcgcaagagcaaaagcaaacg
gcagagccaattattgcaaaagcccgcgagctcgacagccaacttgctatacacgcacaa
actattacaaacctgactcagcaaagcgaaaaagagcagcagcaacttagcgaattacaa
acgcagtacacgcaaagccaacatgcacttgatgaggcaacaaaactcagcactgggcat
caaacgtggctaaacgagcacacgcagcttaaaccattggctaatgattggaattattac
caacatagctttaatacgtatttaagtgccaatgagcaaataaaggcaaccgcttcgcaa
aaccaacagctgttagaagagcaaactaaacaagcggcgctgttagcagagcaaactaaa
aaagtagagctgcaagagcaacaacttgcgcatcaacaaaaagatcttaaccagctaagt
gagcaacaacgccaatttaatattgaacaatgcgatagcaaacttaaaaatattgaatat
ttaaaagatcagcgcttgcgctaccagcagtttaatcaagaaataaaacacagcacacaa
caacaagcggcggttgcggccaagcttgtacacagtgagcaaacgcaaacaacattgcaa
caaagcttagcctcttgcgagcaagcacttaaacacagtgaatacgcattaaaccaagct
cgcctgcgtgccagcgaaaacgtagagcatttacgcacgcagcttacccctaacgagcca
tgtgtagtgtgcggggcaaaagagcacccgtatgcaagcagccaaaacccgcaattaaat
aacctaatagccgattttgaaacaagttataacctagctaagcagcaacacgatagcgcc
caagctaagctgcatcagcaccaaactcaacatgctgtacttgtcactgagcacgcccaa
tacagccaagccatacagagcgcacaggcaaagcagctagaaattaaaacaacaatgcaa
ggggcacgtacagagcttaacgacttaacagcacagcagcttgatgaaacatacgcccag
ctcagcactcaaaagtcgcactattttgaatcgcaaaaacagcaaacagccctgcaagaa
aaagtaaatcagctaataaataacttaaaagccgagcaacatacacagcagcaattgcat
aatcagcatgttgaattaaccaataagcttggccaaataaacactaaacatgcagagtta
aatacgcaagttaacgagcttaccagcacccttaatgcacagtttgagcacagtgacttt
tggcagcaattgcaaaacaacacgcttaatatgagcgatttaagccagcaggttgagcaa
taccagcaaacacaagttcagcttgaacaaagtcaaaaacaaatagacagcgctaatcag
caattacagcaactcacaccgttaatagctaaaagcgagcaagcgcttaaagttttaaac
gacgatttagccaaagcgcaacaactgcaaaacaccacgcgcacagagcgccttgcttta
tttaacaacgagccactaagtgctgatgattaccaagcaaaacttaatacgcagcttgag
caatgccaaaaggcattacatacaagccaacaagcccacgacagcgcaattaaaaaacgc
gatgagcacgctataacactcaaaaacattgagcagcgcttggcagagcaaattcaagag
caaagtacacttgaagagcgctacaatgactggtttagcgactttaaagcgcaatatagc
gaggcaaatcacgaacagatcgctattttactaactctgactagtgagcaaataaaagag
caattaatgcagtttgagcagcgtttagcagcacttacagacgcaaatgcagcgcttaag
caacagcaaaaggcgcaaacagatcaccaaaatactaacaagcccgaaaaaagcgaaagc
caattagcagaacaagaaacgtccttagccaataaacaaactgagctacaaaatagtttg
cttggcactaataccgcgcttgagcaacacaatcaaaacgccaaagcacttaaaggcaaa
cacgctgaacttgctacccttaaaaagcaggtagagcagtggcacgtgcttaataaagta
ctaggggatgcaaccggtaaaaccatgcgtaatttagcgcaaacacaaacccttaaaata
ttgctgcattatgctaacagccatttaaaaaccctcaataaacgctacgagctcactgcc
attgcgcaatcgctcgatatagccattattgaccgcgatatggccgacgaacaacgctcg
gttaatacgctctctggcggtgaatcatttttagtatcactagcactggctttagggctt
gcatcgctttcttcaaacaaagtgcaaatcaactctttgtttattgacgaagggtttggt
acgttagatagcgaaacactcagcgttgctatggacgcactcgactcattacaagcacaa
ggccgtaaagtaggggttatatcgcatgtgagtgaaatgagtgaacgcgtagccacgcaa
gtacatgtaagtaaaaaaagtggtggatactccactgttgaagtcttataa
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integrated database retrieval system
