Pseudoalteromonas agarivorans: PAGA_b0197
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Entry
PAGA_b0197 CDS
T06137
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAGA_b0197 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paga03019
]
PAGA_b0197 (recQ)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_b0197 (recQ)
Enzymes [BR:
paga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAGA_b0197 (recQ)
Messenger RNA biogenesis [BR:
paga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAGA_b0197 (recQ)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PAGA_b0197 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
SNF2-rel_dom
HTH_19
Motif
Other DBs
NCBI-ProteinID:
ATC84151
LinkDB
All DBs
Position
II:166211..168139
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AA seq
642 aa
AA seq
DB search
MTTPLIKSLEQHFGFSQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAIHLPNLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYCEELNIPLVLLLTATATKKV
KRDMSERFNIAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVRAQNGPGIVYVTLQQ
SAEQVANTLSAQGIQAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEYVIN
DIKAQPQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDEQRQAFLTQIFSHTDFKKIWGTLNFDTLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITQVYKVHSEVINNPELAKQLHDYFSDKEQAEIKRIAALVRFFELQSCLSYNLARY
FDDQNAPAQCGHCSVCRGNAVKLEYSIEPAHIADDVVFQKVDEFLAHMATKGIHSVGIET
QCRFLAGMSVPLFARNKVRQLSGFALCEQMRYSDIKAKLLAR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccattaattaaatcacttgagcagcattttggttttagccaatttagagca
gggcaacagcaaaccattgagcagcttttaaatgggcaatcgtcactggctatatttcct
actgggtcgggtaagtcgttgtgttatcagctaacagctatacatttaccaaacttaacc
ttggtggtgtcgcctttacttgcattgatgaaagatcaaattagctttttaaatagcaaa
ggtatttacgcggcaagccttgattcgagccaagaccaaatgcaaagcagcaccgtaatg
aacgatgtgcgaaatggtaaaattaaagtattaatggtgtcggttgagcgttttaaaaac
gagcgttttagagagtttataagccaagttgcgctgtctatgctggtggtagacgaagcg
cactgtatatctgaatggggccataactttagacccgactaccttaaattaccgcgatac
tgcgaagagctaaatattccactggtactattacttaccgccacagccactaaaaaagta
aaacgcgacatgagcgagcgttttaatattgccccagagtgcattgtacaaaccggcttt
taccgcgctaacctcgatttaagcgtgctaagtgtaaaaacggctgataaaaacactgag
cttacaaacatagtgcgtgcgcaaaatggcccaggtattgtgtatgtaacgcttcagcaa
agtgccgagcaagtggctaatacgctaagtgcgcaaggtattcaggcggttgcgtatcat
gcagggcttgaagatacactacgctggcaaattcaagatgattttatggcgggtaaaatt
aacgttgttgtggcaacaatagcctttggtatgggcgttgataaatcagatattcgcttt
gttattcattacgatttaccaaaatcaattgaaaactacagccaagaaattggccgcgca
gggcgcgatggcaacccatcaaactgttacaccttggctaatttagatggcctaaacaca
gtagaaaactttgtgtatggcgacacccctgagcttagcggcattgaatacgtaattaac
gatattaaagcccagccgcagcaatgggaaatgcaagaatacagtctttcaagcgaaagt
aacattcgccaattagcgcttaaaaccttgctggtacaactagaaatgcaaggtgcaata
acgccgcagtacgcctattacgccgattttaaatacaagtttttggttgataaaaacgag
ctacttagccagtttgacgagcagcgccaagcctttttaacgcaaatatttagccacacc
gattttaaaaaaatatggggcacgcttaattttgacacccttacccaagccgcccaagtt
gaccgtaaacgcgtagtagcagcgcttgattacttagccgaaaaaaacctaataaccctt
gaaaccaaacgtattacccaagtttacaaagtgcatagtgaggttataaataaccctgag
cttgcaaagcaacttcatgactactttagcgataaagaacaagcagagattaaacgtatt
gctgcactggtgcgcttttttgaattacaaagctgcttaagctataacttagcgcgttat
tttgacgaccaaaatgcgccagcgcaatgcgggcattgtagtgtatgccgtggtaatgct
gtaaagcttgagtattcaatagagcctgctcacattgccgatgacgttgtttttcaaaaa
gtggatgagtttttagcgcacatggcaacaaaaggtattcacagtgtaggtattgaaacc
caatgccgctttttagcgggcatgagtgtgccattatttgcacgtaataaagtgcgccaa
ctgagtggttttgcgctttgtgagcagatgcgttacagcgatataaaagcaaaattacta
gcgcgttaa
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