Pseudoalteromonas agarivorans: PAGA_b0607
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Entry
PAGA_b0607 CDS
T06137
Symbol
ada-alkA
Name
(GenBank) AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PAGA_b0607 (ada-alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paga03000
]
PAGA_b0607 (ada-alkA)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_b0607 (ada-alkA)
Enzymes [BR:
paga01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PAGA_b0607 (ada-alkA)
Transcription factors [BR:
paga03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PAGA_b0607 (ada-alkA)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PAGA_b0607 (ada-alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
ACT_4
DUF6233
Motif
Other DBs
NCBI-ProteinID:
ATC84488
LinkDB
All DBs
Position
II:522662..524017
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AA seq
451 aa
AA seq
DB search
MNNQYWQKARQSRDARFDGLFYVAVKSTGIYCRPICPAPTAQEKNVVYYQYAHNAAQAGF
RPCIRCRPDSAPGSAAWQGVKTTALRAKQLIDLGDSCNCEMLATRLGITSRYLRRIFNQH
FGVSVTQYRLFNQCQFAKKLIQETTLPITDIAFAAGFKSVRRFNDAFLQQLNIAPSKLRK
SKKEATPVIVLTLPFRPPYNWQALHSFLSKRLIEPMEWITPTNYGRTFKLKGAVGYFNAH
FKAQNNHFKVEIVINNTEHLQKVINNIRRVLDVDADINPIESHLKNSINGAFTLSEGLRL
PGIWSSFEAGIRAVLGQQVSVGAAHTLVTKLVAERGDKHAGKVYFPQPEDLATCDFEFFK
MPQSRKNALKNLSKYCADNPDNRVLDNWLDIKGIGPWTVNYAKLRGQSNPDILLAGDLGV
KKALINAKQFNPELSAPFRSYLTFQLWQQLS
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcagtattggcaaaaagcacggcaaagccgcgatgcacgatttgatggctta
ttttacgttgcggtaaaaagcactggcatttattgccggccaatttgccccgcgcccacc
gctcaagaaaaaaatgtggtgtattatcaatatgcacacaacgcagcgcaagcaggcttt
agaccgtgcatacgctgtaggcccgatagtgctccgggtagcgctgcttggcagggagta
aaaacgaccgcgcttagagctaagcagttaattgatttaggtgatagttgtaattgcgaa
atgctagctactcgtttgggtattaccagtcgttatttgcgacgcatatttaatcaacac
tttggtgtgtctgttactcagtatcggttatttaaccaatgtcagtttgctaaaaagctc
attcaagaaaccacattacccataaccgatattgcatttgccgctgggtttaaaagtgtg
cgacgttttaacgatgcttttttacaacaattaaatatagccccatcaaagctcagaaaa
tcaaaaaaagaggcaacccctgtgattgtattaactctcccttttagacctccttacaat
tggcaggctttgcacagctttttgtcaaagcggttaatagagcctatggagtggataacc
ccaaccaattacgggcgaacatttaagctaaaaggggcggtaggttattttaatgcgcac
tttaaggcgcaaaataaccattttaaagttgaaatagtaataaataataccgagcactta
caaaaagtaattaataacatacgccgtgtacttgatgtagatgccgatataaaccctatt
gaaagccacttaaaaaacagtattaatggggcatttacattaagtgaagggctacgctta
cctggaatatggtcaagctttgaagcggggatccgcgctgtattgggtcaacaagttagc
gtgggggcagcgcacactttagttacaaagctggtcgcagagcgaggcgataaacacgca
ggtaaagtgtattttccacagcctgaggatttagcgacatgcgactttgaattttttaaa
atgccgcaatcgcgcaaaaatgcattaaaaaatttatctaagtactgcgctgataacccc
gataacagggttttggataattggctcgatataaaaggcataggcccatggactgttaat
tacgccaaactgcgtgggcaaagtaacccagatatactattagccggcgatctcggggta
aaaaaggcgctgatcaatgctaagcaatttaacccagaactgagcgctccatttcgctcc
tacttaacgtttcaactatggcagcaactttcatga
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