Pseudomonas agarici: AWM79_00020
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Entry
AWM79_00020 CDS
T11104
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWM79_00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagb03021
]
AWM79_00020
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_00020
Enzymes [BR:
pagb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWM79_00020
Transcription machinery [BR:
pagb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWM79_00020
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWM79_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
AMB83783
UniProt:
A0A0X8F4S3
LinkDB
All DBs
Position
complement(3626..7825)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRIFADLQEVDRVFRAG
EAALHAKIKVRITETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRELDKPAR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccggacgttcaaaccagaacgtgacgggctgttctgcgccaag
atctttggcccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgtggcgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcgtcgccggttgcccacatttggttcctgaagtccttg
ccaagccgtatcggcctgctgatggacatgaccctgcgcgatatcgagcgcgttctctat
ttcgagagctatgtcgttatcgatccgggcatgaccacgcttgagaaaggccagttgctc
aacgacgagcagtacttcgaagccctcgaagaattcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgcgatcgacctggagcacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagttgatggaagccttccagggctccggcaacctgcctgagtggatggtgttgacc
gttctgccggtgctgccgccagacctgcgtccactggttccactggatggcggtcgcttc
gccacttccgacctcaacgatctgtatcgtcgggtgatcaaccgtaacaaccgcttgaag
cgtttgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgatgccctgttggacaacggtcgtcgcggtcgtgccatcaccggttcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttcggttattaccgttggcccgacc
ctgcgtctgcaccagtgcggcctgccgaagaagatggctctggagctgttcaaaccgttc
attttcggcaagctggaaatgcgcggtctggcgaccaccatcaaggccgccaaaaagatg
gtcgagcgcgagctgccggaggtctgggacgttctcgctgaagtcatccgcgaacacccg
gtgctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggtc
ttgatcgaaggcaaggctatccagctgcaccctctggtctgtgcggcgtacaacgctgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gttccgtcgcaggacgttgtactgggtctgtattacatgacccgcgaggctatcaacgcc
aagggcgaaggtcgtatttttgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaggcggccttgcacgccaagatcaaggttcgtatcaccgaaaccgtgaacgaccgtgat
ggcggcagcgtcaagaacacccgtatcgtcgacactactgtcggtcgtgccttgttgttc
caggtggttccagccggcctgtcttacgacgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggtggggctgaaagagacggtgatcttc
gctgaccagttgatgtacaccggctttgcctattcgaccatttctggcgtgtccatcggt
gttaacgacttcgttattccggatgaaaaggctcgcattatcggtgctgccaccgaagaa
gtgaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggcgaacgacgaagtttccaaagcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtcatggcgtcgaggtcgaccaagagtctttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttctgccgcgcagatccgtcagctc
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgaaacgccgattacc
gccaacttccgtgaagggctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgcgaactccggctacctgacgcgtcgtctg
gtggacgttgcacaagatctggtggtcaccgagatcgattgcggcaccgagcatggcctg
ctcatgacgccgcacatcgaaggcggcgatgtcgtagagccgttgggtgagcgcgttctg
ggtcgagtgatcgcccgtgacgtattcaaaccaggtaccgaggacgtcattgttcctgct
ggcacgctggttgacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagtc
atcgtgcgctcgccaatcagttgcgaaacccgttatggcatttgcgccaagtgctatggc
cgtgacttggctcgtggtcatcaggtgaacatcggtgaagcggtcggcgttatcgccgct
caatcgatcggtgagccgggtacccagttgaccatgcgcacgttccacatcggtggtgcg
gcaagccggacctcggcggccgacagcgttcaggtgaagaatggcggtactgtccgtctg
cataacctcaagcacgtcgagcgtgtcgacgggcacctggtggcggtgtcccgttccggc
gagctggcaattgccgacgactacggtcgcgagcgcgagcgctataagttgccgtatggc
gcggtgatttcggttaaagagggtgacaaggtcgacgctggcgccatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcaaaccgacgaattgaccggtatgaccaacattgaa
gtcctcgacgccaaagaccgtccagctgccggtaaagatatccgtccagccgtgaagatg
gtcgatgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccggccaacgccctggtcggcgtggcggatggcgcgaaaatcgcgatcggtgatgtt
atcgcgcgtattccgcaagagacgtcgaagacccgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcattactccgaac
gacggtagtgatccgtatgaggagctgattccgaagtggcgtcacctgaacgtcttcgag
ggcgaacaggtgaaccgtggcgaagtcatctccgacggtccaagcgacccgcatgacatc
ctgcgtctgttgggtgtgagtgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccaccttcatcaagggcgaccagatg
gagctgactcacgtgttggtggaaaacgagcgtctggcgaccgaagacaagttcgtgtcc
aagttcactcgtgtgttgctgggcatcaccaaggcgtcgttgtcgaccgaatcgttcatc
tccgcggcctctttccaagagaccacccgcgtactgaccgaagcggccgtcaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggcgggt
accggcctggcctaccacagcgagcgcaagcgccgccgtgagctggacaagccggcgcgc
gtcagcgccagtgaagtggaagctgcactgaccgaagcgctaaactcaagcggtaactga
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integrated database retrieval system
