Pseudomonas agarici: AWM79_01790
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Entry
AWM79_01790 CDS
T11104
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AWM79_01790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_01790
Enzymes [BR:
pagb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AWM79_01790
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AWM79_01790
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AWM79_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMB84102
UniProt:
A0A0X1SVZ8
LinkDB
All DBs
Position
complement(378614..379426)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRDRRLRWPIPEDLDVRLAGQRIVQVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PFNHPLLIHLGPEPLTELFDGERLFQQSRGRSMAVKPFIMDNAVVVGVGNIYASEALFAA
GIDPRREAGGISRARYLRLATEIKRILAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GREHCKVCGNGLREIKLGQRASVYCPKCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtcgaaaccacccggcgcggtatcgcgccccacctggagggg
cagcgcgtcagtcgcgtgattgtccgcgaccggcgcctgcgctggccgatcccggaagat
ctcgatgtgcgtctggccgggcagcgcatcgtgcaggtcgagcggcgggccaagtacctg
ttgatcaacgccgaggtcggcacgctgatcagccatctggggatgtcgggcaacctgcgc
ctggtggaagtcggcatgccggccgctaagcatgagcatgtggatatcgagttggagtct
ggtctggccttgcgctataccgatccacgccgcttcggggcgatgctctggagtctcgat
ccgttcaatcacccgttgctgattcatctggggcccgaaccactgaccgagctgttcgat
ggcgagcggttgttccaacagtcacgtgggcgttcgatggcggttaagccgttcattatg
gataacgcggtggtggtgggcgtgggtaatatctacgcgagcgaggcgttgttcgccgcc
gggatcgatccgcgtcgcgaggccggggggatttcgcgggcgcgctacctcaggctggcc
actgagatcaaacggatcctggcccatgccatcgagcgcggcggtaccacgttgcgcgac
tttatcggtggcgatggtcagcccggctacttccagcaggaactgttcgtgtacgggcgt
ggccgggagcactgcaaggtctgtggcaatggcttgcgcgagatcaagcttggccagcga
gccagcgtctattgcccgaaatgtcagagctga
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