Pseudomonas agarici: AWM79_03940
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Entry
AWM79_03940 CDS
T11104
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pagb Pseudomonas agarici
Pathway
pagb03410
Base excision repair
pagb03430
Mismatch repair
pagb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AWM79_03940
03430 Mismatch repair
AWM79_03940
03440 Homologous recombination
AWM79_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_03940
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AWM79_03940
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AWM79_03940
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWM79_03940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AMB84504
UniProt:
A0A0X1SXA7
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Position
868824..870533
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AA seq
569 aa
AA seq
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MRIEPRPLPATLPFLGDLPPLLTRLYAARGVESAAELDKSLARLIPFQQLKGIDAAVDLL
VVALEQRQRILIVGDFDADGATASTVGLLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQREPQLLITVDNGISSIEGVLAAKAAGLKVLVTDHHLPGNELPVADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRGLGRYEHQPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVAKRDHSRLTSSDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDPALAQEMATQLDEMNKDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPDWHQG
VIGILASRMKERYHRPTIAFADAGDGMLKGSGRSVAGFHIRDALSVVAARHPDLMGKYGG
HAMAAGLSLPQENFPLFAQAFDAEVRRQLNEDDLTGRLQTDGTLALEEFNLELARALRNA
GPWGQHFPEPLFHGVFQLVEKRIVGERHLKVVLKSECGSVKLDGIAFGIDPQIWANARVD
WVELAYKLDLNEFRGKESVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaaccccgtccactgcccgccaccttgccttttctcggcgacctgccgccg
ctgctgacccgcttgtacgcggcgcggggggtcgaatcggctgcagagctggataaaagc
ctggcgcgcttgattcccttccagcaactcaaggggatcgacgctgcggtggacctgttg
gtggtggcgctggagcagcgccagcggatcctgattgtcggcgacttcgacgccgatggt
gcgaccgccagtaccgtggggctgttgggtctgcgcctgctgggggcggcgcatgtcgat
tacctggtgccgaatcgtttcgagtacggctacggcctgaccccggaaatcgttgctgtg
gcgttgcagcgtgagccgcaattgctgatcaccgtcgacaacggcatctccagtatcgaa
ggtgtactggcggccaaggcggctggcctgaaggtgttggttaccgatcaccacttgccg
ggtaacgaactgccggtggccgatgccatcgtcaacccgaatcagccgggctgcgagttt
ccgagcaaggcgctggccggggtcggcgtgatcttttatgtgttgatggccctgcgtgcg
cgcttgcgcggcctgggccggtatgaacatcagccgcaaccgaatatcggcgaactgctc
gacctggtggcgttgggcagcgtggccgatgtggtgccgctggatgccaacaatcgaatt
ctggtacatcagggcctggagcgcatccgcgccgggcgcgcccgaccggggctgaaggca
attctcgaagtggccaaacgcgatcactcgcggctgacctcaagcgacctggggtttatc
ctcgggccgcgcctgaacgcggcgggtcgcctggacgacatgagcctgggcattgaatgc
ctgctctgcgaagacccggcattggcccaggaaatggccacccagctggatgaaatgaac
aaggaccgtaagtccatcgagcagggcatgcaacgcgaagccctggcccagctcaaggat
ttgccggtggagtcaatgccgttcggcctgtgtctgttcgatccggactggcaccaaggg
gtgatcggtattcttgcctcacggatgaaagagcgttatcaccgcccgaccatcgccttc
gccgatgctggcgacggcatgctcaagggctccggtcgttcggtcgccgggttccatatt
cgcgatgccttgagcgtggtcgcggcgcggcacccggacttgatgggcaagtacggtggc
catgccatggccgccggcctgagtctgccccaggaaaattttccgttgtttgcccaagcc
ttcgatgccgaagtacgccgtcagctcaatgaagatgacctgaccggacgcttgcagacc
gacggcaccctggccctggaagagttcaacctggaattggcccgggcactacgcaacgcc
ggcccctggggccagcacttccccgagccgttgttccacggggtgtttcaactggtggaa
aagcgcatcgtcggcgagcggcatctgaaagtggtgctcaaaagcgagtgtggctcggtg
aagctcgatggcattgcctttggcatcgacccgcaaatctgggcaaacgcacgggtcgat
tgggtcgagctggcctacaagctcgatctcaacgagttccgcggcaaagaaagcgtgcaa
ctgatgattgcccacatcgaaccgcgctga
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