Pseudomonas agarici: AWM79_04225
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Entry
AWM79_04225 CDS
T11104
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03030
DNA replication
pagb03430
Mismatch repair
pagb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWM79_04225
03430 Mismatch repair
AWM79_04225
03440 Homologous recombination
AWM79_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pagb03032
]
AWM79_04225
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_04225
Enzymes [BR:
pagb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AWM79_04225
DNA replication proteins [BR:
pagb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AWM79_04225
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AWM79_04225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AMB84559
UniProt:
A0A0X1SYF8
LinkDB
All DBs
Position
929475..932996
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKALAGLNMPAVAVTDQNNMCSLVKFYKTAMGAG
IKPICGADLWLSNKDSDAPLSRISLLAMNPLGYRNLTELISRGFIEGQRNGMIIVEREWV
AEANAGLIMLSAAKEGEIGMALLGDNAAEAEALAREWMAVFPERFYLEIQRTHRPNDEEQ
LHGAVALAEKLGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPDALENTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPRDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGEGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKIVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KPYQANIDRNRGVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEADADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIINLRVM
KNKKGDKMGFITLDDRSARIEASLFADAFMSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTQLAESLRLKVQSARLQGDELRWLGELFKKHRGACPITMEYTGPDAKAL
LQLGDSWKIDPADSLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatattccctggtcgacggtctg
gtgcggatcaagccgctggtcaaggccctggccggcttgaatatgcccgccgtggcggtg
accgatcagaacaacatgtgttccctggtcaagttctacaagaccgccatgggcgccgga
atcaagccgatctgcggtgccgacctgtggctgtcgaacaaagactccgatgcgccgttg
agccggatcagcctgctggcgatgaaccccctgggttatcgcaatctgaccgagctgatt
tcccgtggcttcatcgagggtcagcgcaacggcatgatcatcgtcgagcgtgagtgggtc
gccgaggccaatgcgggcctgatcatgctgtcggcggcaaaggagggcgagatcggcatg
gctctgctcggcgataacgccgccgaagccgaagccctggcacgtgagtggatggcggtg
ttcccggagcgtttctacctggagatccagcgcacccatcgcccgaacgacgaagaacag
ctacacggcgccgtggccctggccgagaagctgggggcgccgctggtggcgaccaacgat
gtgcggtttatcaagcaggaagatttcgaggctcacgaaacccgcgtctgcatcggtgaa
ggccgggcgctcgatgacccgcgtcgctcgaagaactacagcgaccagcagtacctcaaa
agcgccgaggaaatggccgagctgttcagcgacctgcccgatgccctggaaaacaccgtc
gagatcgccaagcgctgcaatatcgaggtgaaactgggcacgcacttcctgcctaacttt
ccgattcccgatggcatgaccatcgacgagtatttccgcaaggtgtcgttcgatggtctc
gaagagcgtctggcggtcctgctacccagggacaccactgaagactacgaggccaaacgc
caggtctatgtcgaccgcttgaatttcgagctggacatcattatccagatgggcttcccc
ggttacttcctgatcgtcatggactttatccagtgggccaagagcaacggcgtgccggtc
ggccctggccgggggtcgggtgccggttcgctggtggcctatgtacagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgcttcctcaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgatcgggtgatcgactacgtg
gccgaaaaatatggccgcaacgcggtaagccagatcatcaccttcggctccatggccgcc
aaggccgtggtacgcgacgtggcgcgggtgcagggcaagtcctacggcctggcggatcgc
ctgtcgaagatgattcctttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gagatcctgcgtgacttcatcaaggtcgatgaagaagcggcggaaatctgggagatggcc
cgcaagcttgaaggtgtggtgcgcaacgtcggtaagcacgccggcggggtggtgatcgcg
ccgaccaagctgactgacttctcgccgatctattgcgatgaagaaggcgaaggcctggtg
acccagttcgacaaggatgacgttgaggcggccggcttggtgaagttcgacttcctgggc
ctgcggaccctgacgatcatcgattgggcgctgaagaccatcaaccgtgaccgggccaag
gtcaacgaaccgccgctggatattgcctttatcccgctggacgacaaaccgacctacagc
ctgttgcagaaggccgagaccacggcggtgttccagttggagtcgcgtggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagacctcatcgccctggtggcgctgttc
cgtccgggcccgctgcagtccggcatggtggatgacttcatcaaccgcaagcatggtcgt
gccgagctggcgtacccgcactccgattaccagtacgagggcctcaaacccgtattggcg
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggctacacccttggcggcgcggatatgctgcgtcgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggatttatcgagggctgcaagaccaacaacatcgacccg
gacctggccggtaacatcttcgatctggtagagaagttcgccggttacggtttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagactgcctggctgaagacccattat
ccggcgccgttcatggccgcagtgctctcggccgatatgcacaacaccgacaagatcgtg
accttgatcgaagaagtgcgcaccatgaagctgcgtcttgacgcgccggacgtgaatgct
tcggagttcaagttcacggtgaacgacgaaggccggatcatctacggcctcggcgccatc
aagggcgtcggcgaaggcccggtggaggcgattaccgaagcgcgccaggacggtcccttc
aaggacctgttcgatttctgcgcacgggtcgatctcaagcgcatcaacaaacgcaccctc
gacggcctgatccgcagtggcgcgttggatcggctcggtccgtatttccacgacgagccc
aagccttaccaggccaatatcgaccgtaaccgcggggtcctgctggcggcgatggaagaa
gcgatcaaggccgccgaacagaccgcgcgcacccatgacagcggccacgccgacctgttt
ggcggattgttcgtcgaggcagacgcggatgtctatggcaatcaccgcaaggccaaggaa
ctgaccctcaaggagcgcctgaaaggcgagaaggacactctcggtctttacctgaccggt
catccgatcgatgagtacgagggcgagattcgtcgtttcgcccgccagcgcatcatcgac
ctgaagccggcccgggatacccagaccgtggcggggatgatcatcaacctgcgggtgatg
aaaaacaaaaaaggcgacaagatgggctttatcaccctcgacgaccgctcggcgcgaatc
gaggcgtcattgttcgccgatgcttttatgtcggcccaatcgttgttgcagaccgatgca
atggtggtggtcgagggcgaggtcagtaacgatgatttctccggtggtctgcgcctgcgg
gtcaagcgtgtgatgagcatggaggatgcccgtacccaactggccgagagcctgcgcctg
aaggtgcaaagtgccaggctccagggcgatgagctgcgctggctgggcgagttgttcaag
aagcaccgaggcgcctgtcccatcaccatggagtacaccggtccggatgccaaggcgctg
ttgcagctcggcgacagttggaagatcgaccccgctgacagtctgattcaggcattgcgt
gaccagttcgggcgagacaacgtctttctccaataccgttga
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