Pseudomonas agarici: AWM79_08670
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Entry
AWM79_08670 CDS
T11104
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM79_08670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagb03019
]
AWM79_08670
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_08670
Enzymes [BR:
pagb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWM79_08670
Messenger RNA biogenesis [BR:
pagb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWM79_08670
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWM79_08670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_23
HTH_40
Sigma70_r4_2
Sigma70_r1_2
GerE
PAX
Motif
Other DBs
NCBI-ProteinID:
AMB85374
UniProt:
A0A0X1SZW8
LinkDB
All DBs
Position
complement(1970794..1972923)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRELASRIRRGEVKMLYLAPERLVQ
PRMLAFLQNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPNVPRIALTATADKRT
REEIVNRLHLQEAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSQRRGDAGIVYCLSRKK
VDEVAALLCEQGFPALPYHAGLPNETRAANQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEHHK
LDAMLALCEEIRCRRQTLLAYFDEDLPQPCGHCDNCVDGVRTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKENDKVRSFGHQHLSVFGVGKARGESEWRSLFRQLVARGLADIDLE
GYGGLRLTDTCRPLLRGEVSLELRHELKPQTLAKSVSASPASQLVRGEERERWEALRALR
RKLAQEHGVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLEVLGGEA
EAPKVVADIRHKLISLARAGMTPLQIAGQLQCSEKNVYTLLAEAISRQQLSLEQALDLPE
DLLGEVQDAFLDGEGQLPAVTEIAAQFVGRVPEGVLYCVRAALQSEFES
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgtgctcaaggacatcttcggttacgacagctttcgtggt
cgtcaaggtgccattattgagcgcgtggccaacggcggcgatgctctggtgctgatgccc
accggtggcggcaaatcgctgtgcttccaggttcctgcgttgttgcgcgaggggctcgcg
gtggtggtttcgcctctgatcgcgctgatggacgaccaggtcgcgacgctggaagagctg
ggtgtggcggcggcctccctgaattccaccctgagcgccgagcagcagcgcgagttggcc
tcgcgaatccgccgtggtgaagtaaaaatgctctaccttgcccccgaacggctggtacag
ccgcgtatgctggcgttcctgcagaacctcgatatcgccctgttcgccatcgacgaggcc
cactgtgtgtcgcagtggggccacgacttccgaccggaatacctgcaacttgggcaactg
gccgaaatgtttccgaatgtgccgcgtatcgccctgaccgccaccgccgacaagcgtacc
cgcgaggagatcgtcaatcgcctgcacttgcaggaggccgagcgttttctctccagtttc
gaccgaccgaatatcttctaccggatcgtgcccaaggagcagccgcgcaagcagttgttg
gcgttcctctcgcagcgccgtggtgatgccgggatcgtttattgcctgtcgcgcaagaaa
gtcgatgaagtagccgcgctcctctgcgagcagggttttccggcattgccgtatcacgcc
ggcttgcccaacgaaacccgtgcggccaaccagaagcgctttctcaacgaggaaggcttg
atcatggttgcgaccatcgccttcggcatgggcatcgacaagtccaacgtgcggtttgtg
gcgcacctcgatttgcccaagtcccttgaggcctattaccaggagaccggtcgtgctggc
cgcgacggactgccggcggacgcctggatggcctacggcctgcaggacgtggtgatgctc
aagcagatgctccagaactccgagggcgacgagcgccacaagcgcctggaacatcacaag
ctcgatgccatgctggcgttgtgtgaggaaatccgatgccgacgccagaccttgctggcc
tatttcgacgaagacctgccgcaaccctgcgggcattgcgacaactgcgtcgatggtgtg
cgcacctgggatgccaccgagccggcacggcaggcgctgtcggcgatttaccgcacaggg
cagcgctatggtgtcggccatctggtggatgtgttgctgggcaaggagaacgacaaggtg
cgcagcttcggtcaccagcacctttcggtgttcggcgtgggcaaggcgcgtggcgagagc
gagtggcgctcgttgttccggcaactggtggcgcgcgggctggcggatatcgacctggaa
ggctacggcggcctgcgtctgaccgacacctgccgaccgttgttgcggggggaagttagc
ctggagttgcgccacgagctcaagccgcagaccttggccaagagcgtctccgccagcccg
gccagccagttggtgcgcggtgaagaacgtgagcgctgggaagccctgcgtgccctgcgg
cgcaagctggcccaagagcatggcgtcccgccgtatgtcatttttcccgattccactctg
ctggagatgttacgcagccagccgacctctctggcggaaatggcccgggtcagtggcgtc
ggcgcacgcaagctggagcgttacggtgaagccttcctcgaagtgctgggcggcgaggcc
gaggcgcccaaggtggttgccgatatccgccataagttgatcagtctggcccgtgccggg
atgacgcccctgcagattgccggccagttgcaatgctcggaaaaaaatgtctataccctg
ctggctgaagccatcagccgccagcaattatcgctggagcaggccctggacctgcccgaa
gatctgcttggcgaagtgcaggatgcatttcttgacggtgaaggccaattgcccgctgtg
acggagattgccgcgcagttcgtcgggcgcgtcccggagggtgttctgtactgcgtgcgg
gcggccctgcaatccgaattcgaatcataa
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