Pseudomonas agarici: AWM79_10325
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Entry
AWM79_10325 CDS
T11104
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM79_10325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagb03019
]
AWM79_10325
03009 Ribosome biogenesis [BR:
pagb03009
]
AWM79_10325
Enzymes [BR:
pagb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWM79_10325
Messenger RNA biogenesis [BR:
pagb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWM79_10325
Ribosome biogenesis [BR:
pagb03009
]
Prokaryotic type
rRNA helicases
AWM79_10325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AMB85673
UniProt:
A0A0X1T0S7
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All DBs
Position
2336274..2337947
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AA seq
557 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPERSDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcaattccgatcatc
cttgccggtcacgacatgattggtcaggcacaaaccggtaccggtaaaacggccgctttc
gccctgcctatccttcaccgcatcgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcag
atgccgggcgtgacggtcgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gccatccggaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtcatcttcaaggccatgccggaaagc
cgtcagactgtcttgttctcggccaccctgccgcaatcgattcgtgccatcgccgagcgt
cacctgcgcgatcccaagcacgtgaagatccagagcaagacccagactgtcaccgcgatc
gagcaggcccacctgctggttcacgccgaccagaagacctcggcagtgctgagcctcctg
gaagtcgaggacttcgacgccctgattatgttcgtgcgcaccaagcaagcgaccctggac
ctggccggtgccctggaagccaaaggctacaaggctgccgcgctgaacggcgacattgcc
cagaaccagcgtgagcgcgtgatcgattccctcaaggatggccgcctggacatcgtcgtg
gctaccgacgtggcggctcgtggtctggacgttccacgcattacccacgtattcaacgtg
gacatgccatacgatccggaatcctacgttcaccgtattggtcgtaccggccgtgccggt
cgcgaaggccgtgcgctgctgctggtgactccgcgtgagcggcgcatgctgcaagtgatc
gagcgtgtgaccggtcagaaagttgccgaagtccgtttgccggatgcccaggccgttctt
gatgcccgcatcaagaaactgaccaatagcctgtcgccgctggtggccgatgctgaatcg
acccacggtgatctgctcgatcgtctgaccgccgatatcggttgcagcccacgtgcgctg
gccgcagccctgctgcgcaaggctaccaatggtcaagcgctgaacttggccgctatcgag
aaagagcgtccactggtgccgaacaatgcgccacgtggcgatcgtcccgagcgttcgggt
gatcgtcccgagcgtagcgatcgtgagcgtcgtgcaccgattccgctggctgaaggccgt
gctcgctgccgtaccgcgctgggcgcgcgcgacggtatcgccgccaagaacctgctgggt
gcgatcctcaacgagggtggcctggcgcgtgaagctatcggtcgcatccaagtgcgcgac
agcttcagcctggtggaattgccggaagatggcctggagcggttgctgaccaagctgaag
gacacccgtgtggccggcaagcagctcaagctgcgtcgctatcgcgaagattga
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