Pseudomonas agarici: AWM79_13905
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Entry
AWM79_13905 CDS
T11104
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03420
Nucleotide excision repair
pagb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWM79_13905 (uvrD)
03430 Mismatch repair
AWM79_13905 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_13905 (uvrD)
Enzymes [BR:
pagb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWM79_13905 (uvrD)
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWM79_13905 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AWM79_13905 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
AAA_11
Myb_DNA-binding_7
Motif
Other DBs
NCBI-ProteinID:
AMB86337
UniProt:
A0A0X1T2L5
LinkDB
All DBs
Position
complement(3177604..3179784)
Genome browser
AA seq
726 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPYSIL
SVTFTNKAAAEMRHRIEQLMGISPGGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQNIQASGDLFLATMRSIYEAYE
AACARANVIDFSELLLRALDLWRNNDGLLKHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSEDFPDAETIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVESIREHARHSHVSMWEAMGQLIAHKGLTGRAASALGTFIELIENLAAKTKDTPLH
LMTQIVIEQSGLIAYHQAEKGEKGQARVENLEELVSAARNFEVAEEEQELSPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
QQSSSLFGGSNIPDTGFSLGQAVRHSVFGDGVILNFEGAGAQARVQVNFSEGSKWLMLGY
AKLEAT
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gcagcccccgttggccgtcagttggtcctggctggcgccggctccggtaaaacccgggtg
ctggtgcatcgtatcgcctggttgatccaggtcgaaaacgcctcgccctactcgatcctg
tcggtgaccttcaccaacaaggccgccgccgagatgcgccatcgtatcgagcagttgatg
ggcatcagccccggcggcatgtgggtcgggacctttcacggccttgctcaccgtctgctg
cgggcgcactggcaagaggccgggctgagccagaccttccagatcctcgacagcgacgat
cagcagcggttggtcaagcgggtgatccgcgaactgggcctggacgaacagcgctggccg
gcgcgccaggcgcaatggtttatcaacggccagaaagacgaagggctgcgtccacagaat
atccaagccagcggcgacctgttcctggcgaccatgcgcagtatctatgaggcctatgaa
gccgcttgcgcccgcgccaacgtgatcgacttctctgaactgttgctgcgtgccctcgac
ctgtggcgcaacaacgacggtttgctcaaacactaccaaaagcgcttccggcacatcctg
gttgacgagttccaggacaccaacgctgtccagtacgcctggttgcgcctgctggccaag
ggtggcgacagcctgatggtggttggcgacgacgaccagtcgatctacggctggcgcggc
gcgaaaatcgagaacatccaccagtactccgaagacttcccggacgccgagaccatccgc
ctggagcagaactatcgctccaccgccggcatcctcaaagcggccaatgccctgatcgcc
aacaacaccgggcgcctgggcaaggagctgtggaccgacggcggcgaaggcgaggcaatc
aacctttacgccgcattcaacgaacacgacgaagcgcgctatgtggtggaaaccatcgaa
agcgcgctgaagaccggtctggctcgcagcgatatcgccatcctgtaccgttccaacgcc
cagtcgcgggtgctggaagaagcgctgctgcgcgagcgcatcccttaccggatctacggt
gggcagcgcttcttcgaacgcgccgagatcaagaacgccatggcctatctgcgcctgctc
gaaggccggggcaacgatgcggcgctggaacgggtgatcaacgtgccggcgcgcggcatc
ggcgagaagaccgtggaatccattcgcgaacacgcccgccacagccatgtgtcgatgtgg
gaagccatgggccagttgatcgcccataaaggcctgaccggtcgcgccgccagtgcgctg
gggacttttatcgagttgatcgagaacctggccgcgaagaccaaggatacgccattgcac
ctgatgacccagatcgtcatcgagcaatccggcctgatcgcctaccaccaagcggaaaaa
ggcgagaaaggccaggccagagtagaaaacctcgaggaactggtcagcgccgcacgcaac
ttcgaggttgccgaagaagagcaagagctgtcgccgctagccgccttcctcggtcacgct
tcactggaagccggtgatacccaggccgacgagcacgaagacagcatccaactgatgaca
ctgcacagcgccaagggcctggaattcccctacgtgttcctggtgggcatggaagaaggc
ctgtttccccacaagatgagcctggaagagcctggccgtctcgaagaagaacggcgcctg
gcctatgtcggcattacccgggccatgcagaacctggtcatgacctacgccgaaacccgt
cgcctatatggcagcgagacctataataaagtgtcacgtttcgtccgcgaagtgccgaag
ggactgatccaggaagtgcggctgtccaatagcgtcagccgcccgttcggtggcggccag
caacaaagcagcagcctgtttggcggtagcaatatccccgataccggtttcagcctgggt
caggcggttcgtcacagtgttttcggcgatggggtgatcctcaacttcgaaggggccggc
gcccaggcacgggtgcaagtcaacttcagcgaaggcagcaagtggctgatgctcggttac
gccaaactggaagccacctga
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