Pseudomonas agarici: AWM79_18395
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Entry
AWM79_18395 CDS
T11104
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM79_18395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagb03019
]
AWM79_18395
03016 Transfer RNA biogenesis [BR:
pagb03016
]
AWM79_18395
Enzymes [BR:
pagb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AWM79_18395
Messenger RNA biogenesis [BR:
pagb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AWM79_18395
Transfer RNA biogenesis [BR:
pagb03016
]
Prokaryotic type
tRNA degradation factors
AWM79_18395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AMB87162
UniProt:
A0A0X1T5A3
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All DBs
Position
complement(4172537..4174642)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVIQAVKELAAEAAKPTWTWAPQAEA
SELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSSDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPDAA
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgctcgtcaggcctccggcgcggtgctggtcaccgttgacaacgacgtcagcgta
ttggtgaccgttgtcggtgccaagcaagcggatccgggcaagggcttcttccctctgtcc
gtgcactaccaggaaaagacctacgctgccggcaagatccctggcggcttcttcaagcgt
gaaggccgtccttccgaaaaagaaaccctgacttcgcgcctgatcgaccgtccgatccgc
ccgctgttccctgaaggtttcatgaacgaagtgcaggttgtctgcaccgtcgtctccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggcacttcggcggccctggccatc
tccggtattcctttcgacggcccgatcggcgccgctcgcgtggctttccacgaaagcacc
ggctacctgctgaacccaacttacgaacaactgaaagcctcgagcctggacatggtcgtg
gccggtacttcggaagccgtattgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgtttgcccacgacgaattccaagtggttatccaggcggtc
aaagagctggccgccgaagctgccaagcccacctggacctgggctccccaggcagaagcc
agcgaactgctgggtgctatccgcgccgagttcggcgaagcgatctcccaggcctacacc
attaccgtcaaggccgaccgttacgctcgcctgggcgaactgaaagaccaggtggttgcc
aaactgtcgggcgaagaaggccagccttcctcgagcgacgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgatggtcgt
gacacccgcaccgtgcgccctctgaacatcgaagtcggtgttctgccaaagacccacggt
tcggccctgttcacccgtggcgaaacccaggccctggttgttgccacgctgggcaccgcc
cgtgatgcacagttgctggacaccctggaaggcgagaaaaaagaccccttcatgttgcac
tacaacttcccgccgttttcggtgggcgaatgtggtcgcatgggcggtgccggtcgtcgt
gaaatcggtcacggtcgcctggcgcgccgttcggtccaggccatgctgccggatgccgcc
gagttcccatacaccatccgtgtggtatcggaaatcactgaatccaacggttcgagctcc
atggcttcggtctgtggtgcttccctagccctgatggacgctggtgtgccgatgaaggcg
ccggttgctggtatcgccatgggtctggttaaagagggcgagaaattcgccgtgttgacc
gacatcctgggtgacgaagaccacctgggtgacatggacttcaaggtagccggtaccgcc
aagggcgttaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcaatcgcgtaccgagctgtcggaaaacgccccaaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaagggcggcgcgaccatccgtgcgatc
tgcgaagaaaccaaggcttcgattgatatcgaagacgacggttcgatcaagatcttcggt
gaaagcaaggaagctgccgaggctgcacgccaacgcgtcctgagcatcaccgccgaggct
gaaatcggcaagatctacgtcggcaaggtcgagcgcatcgttgactttggcgcgttcgtc
aacatcctgccgggcaaggacggtctggtacacatctccatgctgagcgacgctcgcgta
gagaaagtgaccgacatcctgaaggaagggcaggaagttgaagtactggtgctggacgtg
gacaaccgtggccgtatcaagctgtccatcaaggacgtcgcagcagctaaggcgtcgggc
gtttaa
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