Pseudomonas agarici: AWM79_19045
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Entry
AWM79_19045 CDS
T11104
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AWM79_19045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pagb03400
]
AWM79_19045
Enzymes [BR:
pagb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AWM79_19045
DNA repair and recombination proteins [BR:
pagb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AWM79_19045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AMB87275
UniProt:
A0A0X1T5B7
LinkDB
All DBs
Position
complement(4323727..4327422)
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AA seq
1231 aa
AA seq
DB search
MTAIKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEATGFGRELLPPQIL
VVTFTDAATQELRDRIRTRLAEAARFFRDETPAPDDLIGQLRAQYPTEQWPACANRLDIA
AQWMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLYCYKMQG
EALNWVRANWVGPVALLPRVRALLGRERSTSARQDDPEPGELIDACLEERRAALVQLKAP
WKQWAAQLREICRQGVANKTVDGRKMQARYFEPWFDKLSAWAEDETLEQLDIGTGFSRLT
ADGLAEAWKGEAPRHPGLDAMSGLQARLEALPTPDAAVLEHAACWVGARFEDEKRRRAEM
GFDDMLLRLDAALQAEGGERLANLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNHPD
AGLFLIGDPKQAIYAFRGADIYTYLRARLATRGRLHTLGTNFRSSQAMVDSVNHVFARAE
QRERGRAAFLFRDGEQNPVPFLSVAAQGRKDVFEIDGQPPPALHLWHLASEQPVSGAAYR
QQLAATCASEIVGLLNGGQQGRIGFNRDGEFKGMLPSDIAILVRDGKEAQAVRGELAARG
VRSVYLSDKDSVFAAQEAHDLLAWLRACAEPDVERPLRAALACITLNLPLAELERLNQDE
LAWEARVMQFRGYRTLWRTQGVLPMLRRLFHDFQLPKALIARSDGERVLTNLLHLSELLQ
QAAGELDGEQALIRHLSEHLALSGPAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLP
FICSVKPVDGSRLPLHYHDGEGRAQVSLKPTAELIAQADDERLAEDLRLLYVALTRAQHA
CWLGVADLKRGNNNSSVLHLSALGYLLGGGDVLGESTGLVRWLEALRQDCPSLACEQLPV
ATDAPFRPPRNPANLREPLLPKRRASEHWWIASYSALRIGNQFSAERDEAPESPQAQKLF
DDERLDPDAPREVATGGGDIHRFPRGPNPGTFLHGLLEWAGSERFTADRGVIEKALAPRC
NLRGWKGWIETLVDWLAHLLQVPFRLGNDQPAVVLGDLDNYQVEMEFWFASHKVDVHQVD
ELVRRHTHGGVTRAAAEPVLLNGMFKGFIDLTFEHQGRYYVADYKSNWLGADDAAYTERA
MAASILENRYDLQYVLYLLALHRQLKARLVDYDYDRHMGGALYLFLRGSRSPSQGAYFVR
PPRELIEHLDLLFQGKPVAKSEPAWEQGSLL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctatcaagacgccgctggccctggcctttccgttgcgcggcagccagttgatc
gaggcgagtgccggcaccggcaagacctttaccatctccgccctgtacctgcggctggtg
ctcggccatggtggcgaagcgaccggtttcgggcgcgagctgctgccaccgcaaatcctt
gtggtgacctttaccgatgccgccacccaggagctgcgcgaccgcatccgcacccgcctc
gccgaagctgcgcggttcttccgtgacgagacgccggcaccggacgatctgatcgggcaa
ttgcgcgctcaatacccaaccgagcaatggcccgcctgtgccaaccgtctggacatcgcc
gcacaatggatggacgaagcggccgtctcgactattcacggctggtgccagcgcatgctg
cgcgaacatgccttcgacagcggcagcctgtttacccagaccctggaaaccgaccacagc
gacctgctcggcgaagtgctgcgcgattactggcggctctattgctacaagatgcagggc
gaggcgctgaactgggtacgcgccaactgggtcggcccggtggccttgttgcccagggtc
agggccctgcttggtagggaaagatccaccagtgcacgacaggatgaccccgagcctggc
gaactgatcgatgcctgcctggaggaacgtcgcgccgctttggtgcagctcaaggcaccg
tggaaacaatgggccgcgcaattgcgcgagatctgccggcaaggcgtggcgaacaaaacg
gttgatggtcgcaagatgcaggcgcgctacttcgaaccttggttcgacaagctcagcgcc
tgggccgaagacgaaaccctggaacaactggacatcggcactggcttcagtcgcctgacc
gccgatggcctggccgaagcctggaaaggcgaagccccacggcatcccggccttgacgcc
atgtccggtctgcaagcccgtctcgaggccttgccgactcccgacgccgccgtgctggaa
catgctgcctgttgggtcggtgcccgtttcgaggacgagaagcgccgccgcgccgaaatg
ggtttcgacgatatgctgctgcgtctcgacgccgcgttgcaggccgaaggcggcgaacgt
ttggcgaacctgatccgcgaacagttcccggtggccctgatcgacgagttccaggacacc
gatcccgtgcagtaccggatcttcgaaagcatctatcgcatcgaagacaaccaccccgac
gctggcctgtttcttatcggcgaccccaagcaggcgatctacgccttccgtggagccgat
atctacacctacctgcgcgcccgcctcgccactcgcggtcgcctgcataccttgggcacc
aacttccgctccagccaggcgatggtcgattcggtcaaccatgttttcgcgcgggccgag
cagcgtgagcggggacgcgctgcgttcctgtttcgcgacggcgagcagaacccggtgccg
ttcctgtcggtggccgctcaaggccgcaaggacgtattcgagatcgatgggcagccgccg
ccggcactgcatctctggcacctggcctccgagcagccggtatctggcgcggcctatcgc
caacaactggcggcgacttgtgccagtgaaatcgtcggtctgctcaatggtgggcaacag
ggccgcatcggcttcaaccgtgatggcgagttcaagggcatgttgccatccgatatcgcc
atcctggtccgtgacggcaaggaagcgcaggcggtgcgcggcgaacttgccgctcgcggt
gtgcgcagtgtctacctgtcggataaggactcggtcttcgccgcccaagaagcccacgac
ctgctggcctggctcagggcctgcgccgagccggatgtcgaacgtccgctacgggcggca
ctggcctgtatcaccttgaacctgccattggccgagctggagcgactgaaccaggacgaa
ctggcctgggaagcacgggtcatgcaatttcgcggttatcgaacgctgtggcggacccag
ggtgtgctgccgatgttgcgtcgtttgttccatgactttcaattgcccaaggcactgatt
gcccgcagcgatggcgagcgggtgctgaccaatctgttgcatctgtccgagttgctgcaa
caggccgctggcgagctggatggcgagcaggcgctgatccgtcatctgagcgaacacctg
gcactgtccggtccggccggcgaagagcagatcctgcgtctggaaagcgacgagcaactg
gtcaaggtggtgactatccacaagtccaagggcctggaataccccttggtgttcctgccc
tttatctgttcggtcaaaccggtggacggtagccggctgccgctgcattaccacgacggc
gaggggcgggcccaggtcagcctcaagcctaccgccgagctgatcgcccaggccgacgac
gagcgcctggccgaggatctgcgcctgctctacgtggccctgacccgggcgcagcacgct
tgttggctgggtgttgccgacttgaagcgaggcaataacaacagctcggtgctgcacctg
tcggcccttggttatctgctgggcggcggcgacgtactgggcgagtccactggcctggtt
cgctggttggaggcgttgcgccaggactgtccgagcctggcctgcgagcaactccccgtg
gccaccgatgcgccgttccggccgccgcgcaacccggcgaacttgcgcgagcccctgctg
cccaaacgtcgtgcctcggagcattggtggattgcctcttacagtgccctgcgcatcggc
aatcagttcagtgccgagcgcgacgaagcgccggaaagcccccaggcacagaaactcttc
gacgatgagcgcctggacccggatgctccccgcgaagttgccaccggcggcggcgatatc
catcgtttcccccgtggtccgaatcccggcacttttctccatggcttgctggagtgggcc
ggcagcgagcgcttcacggctgatcgtggggttatcgaaaaagcactggcgccacgctgc
aacctgcggggctggaaaggctggatcgagaccctcgtcgattggcttgcacatctgctg
caagtgccgtttcgcctcggtaacgaccagcctgcggtggtcctcggggacctggacaac
tatcaggtcgagatggagttctggttcgccagccacaaggtcgatgtgcatcaggtcgac
gaactggtgcgtcgccatacccacggcggcgtgacgcgggcggcggcggagccggtgttg
ctcaacggcatgttcaagggctttatcgacctgaccttcgagcaccaggggcgttattac
gtggccgactacaagtctaactggctgggcgccgacgacgccgcctataccgagcgcgcc
atggccgcgtcgatcctggaaaaccgctacgacctgcaatacgtgctctacctgctggcc
ctgcatcgccagctcaaggctcgtctcgtcgattatgactatgaccggcatatgggcggc
gcgctctatctgttcttgcgcggcagccgctcgccgagtcagggcgcgtatttcgtccgg
ccaccgcgggagctgatcgagcacctggacctgttgtttcagggcaaacccgtcgcgaaa
tccgagcccgcctgggagcaggggagtctgctatga
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