Pseudomonas agarici: AWM79_22835
Help
Entry
AWM79_22835 CDS
T11104
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pagb Pseudomonas agarici
Pathway
pagb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pagb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM79_22835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pagb03019
]
AWM79_22835
03009 Ribosome biogenesis [BR:
pagb03009
]
AWM79_22835
Enzymes [BR:
pagb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AWM79_22835
Messenger RNA biogenesis [BR:
pagb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWM79_22835
Ribosome biogenesis [BR:
pagb03009
]
Prokaryotic type
rRNA processing factors
AWM79_22835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AMB87957
UniProt:
A0A0X1T773
LinkDB
All DBs
Position
5214771..5217992
Genome browser
AA seq
1073 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPDGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAEVEEVQPVAATRTLVRQEAAVKTAPARANAPVPSEVVA
PVAAAPAPVAEPSLFKGLVKSLVRLFATKEEPAAPVVVEKPATERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREERVPREPREERAPRDAREAREEAPAVAREERAPRAPREER
APRAPREDRKPRGEREERVRELREPLDTAPAVAGAAAAIAEERPARAPREERQPRAPREE
RQPRIGQATVVSEEEQALRGEEQPQDDSQDNAEGGDRPRRRSRGQRRRSNRRERQRDANG
NVIEGSEEGSEGHQGDASTDELAAGLAVTAAVASSVISAPAEAEAHQQAERATATVEHSP
PVETPVVEAGASMEVIGAPKVEVAPVVEAAPVVQAPTELTVDTELPMPVTPEPTVQAAVV
ETPVVAAPVIETPAEKAPEPIQEVQATFEWSAEPAVVEAPRQAAPVAEPMLVEPPATELV
EAAQSTPTPVEAPTVVVSSNGRAPNDPREVRRRKREEEARKAAELAGATIAPAVEAQVAA
GEPVIPQAATAPVVSTESEATAPTIDENLQSGEEVIEHAPKALEEAHEPKPLA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgggttgcactggtagacggccagcgc
ctctacgacctggacattgaatccggtgcacgcgagcagaagaaggccaacatctataaa
ggccggattactcgcatcgaaccgagcctcgaggcggcctttgtcgatttcggctccgag
cgccatggcttcctgccccttaaagaaatctcccgcgaatacttcaaaaaagcccctgac
ggccgcgttaacatcaaagacgtcctgagcgaaggccaggaagtcatcgtccaggttgaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggccggtcgt
tacctggtactgatgccgaataacccgcgtgctggcggcatttcccggcgtatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctggtggctcccgctgacatgggc
ctgattgtgcgcaccgccggcctgggccgcagtagcgaagaaatgcagtgggacctcgat
tacctgctgcagctgtggaccgcgatcaaggaggcgtccctggatcgttccgcccctttc
ctgatctaccaggaaagcaacgtgatcatccgtgctatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgatagcgtcgaagcccaggacgaagccctgactttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtcccgctgttc
aatcgcttccagatcgaaagccagatcgagaccgcttttcaacgtgtcgtcgaactgcct
tccggtggctccatcgtgatcgatccgaccgaagccctggtgtccatcgacattaactcg
gcgcgtgccaccaaaggcagcgacatcgaagaaaccgcgctgcagaccaacctcgaagcc
gctgaagaaattgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtgatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtccgtgaatgc
ctggaagcggatcgtgcccgcgtacaagtcgggcgcatttcgcgcttcggcctgttggaa
atgtcccgccagcgcctgcgcccctccctgggcgaaagcagcggcatcgtctgcccgcgt
tgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatcctgcgcctg
atcgaggaagaagccctgaaagatcgcaccgccgaagtccgtgcccaagtgccgattccg
gttgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgcatcgtgatcctgccgaacgatcaccttgagacgccgcactttgaagtgcaa
cgtctgcgcgacgacagcccggaagcccataccaaccaatccagctacgaaatcgccgcc
gctgctgaagtcgaagaagtccagccggtcgctgcgacccgcaccctggttcgccaggaa
gctgcggtgaagaccgccccggcccgcgctaatgcgccggtgccaagcgaagtggtcgcg
ccggttgcagccgcccctgccccggttgccgagccaagcctgttcaagggcctggtgaag
tcgctggtccgcctgttcgccaccaaggaagagccagccgcgccggtcgtggtcgagaaa
ccggccaccgagcgtccagcccgcaacgaagagcgtcgtaacggtcgtcagcagagccgc
aaccgtaacggtcgccgcgatgaggagcgcaagccacgcgaagagcgtgccccccgtgaa
gaacgtgtaccacgcgagcctcgtgaagaacgtgcgccacgtgatgcccgcgaagcccgt
gaggaagctccggctgtagcccgtgaggaacgtgctccacgcgctccccgcgaagaacgc
gcaccacgtgcgccacgtgaagatcgcaagccacgtggcgagcgtgaagaacgtgtacgc
gaactgcgcgagccgctggataccgccccggcagtcgccggtgccgccgccgctatcgct
gaagaacgtccggcccgcgccccgcgtgaagagcgccagccacgtgcgccgcgtgaagaa
cgccaaccacgtatcggacaggccacggtggtcagcgaagaagagcaagcgttgcggggc
gaagagcaaccgcaggatgacagccaggacaacgccgaaggcggcgatcgtccacgtcgt
cgttcccgtggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgtgatgccaacggt
aatgtgatcgaaggctccgaagaaggcagcgaaggtcatcagggcgacgccagcactgac
gaactggctgccggcctggccgtgaccgccgctgtcgccagcagcgtgatcagcgcgccg
gctgaagccgaagctcaccagcaagctgaacgcgccactgctaccgtagagcactccccg
cccgttgaaacaccggtggtggaagctggcgcttcgatggaagtgatcggcgcaccgaaa
gtggaagttgctccggttgtcgaagccgcgccagtggttcaagcgccgactgagttgacc
gtggacaccgaactgccaatgcccgtgaccccggaaccaactgtccaagctgcggttgtc
gaaacgcccgtggttgcggccccggtgattgaaaccccagccgagaaagccccggagccc
atccaggaagtccaggcgaccttcgaatggtccgctgaaccagccgttgtcgaagcacca
cgacaagcagcgccagtcgccgagccgatgcttgtcgaaccgcctgccaccgagctcgtg
gaagctgcacaatcaacgccgactccggtcgaagccccgacggtggtcgtgtccagcaat
ggccgggcgccgaacgacccacgtgaagtacgtcgccgcaagcgtgaagaagaagcgcgc
aaggccgccgaactggcaggcgcaacgatcgcccctgccgtggaagcgcaagtggctgct
ggcgaaccggttataccacaagccgctacggcgcctgttgtcagcactgaaagcgaagca
actgcaccgaccatcgacgagaacctgcaatccggcgaagaagtgatcgagcacgcgcca
aaagccctggaagaagcccacgaacctaaacccctcgcctga
DBGET
integrated database retrieval system
